Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0642 ATGGAACCGGAAGAAACCGCCGCCGCCGCCGCCGACGGAAGCGGCGACGAGGGGCTGCTCGGGCTAGACAGCGGCAGCGGCGGCGGTGGAAGGGACAGAGTGAAGGGTCCATGGTCGCCGGAAGAGGACGTCATTCTGAGCCGTCTGGTGAGCAAGTTCGGCGCGAGAAATTGGAGCCTCATCGCGCGCGGGATCAGCGGAAGATCCGGCAAGTCGTGCCGGCTCCGGTGGTGCAACCAGCTCGATCCCGCAGTCAAGCGCAAACCCTTCACCGATGAGGAGGACCAGATGATAGTTGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCGATTAAGAACCACTGGAATTCCACTCTGAGGCGTCGGGGAGTTGGACATGATACGATTAAATTAGAATCTGGCAGCTTCATGGAAGATGTTAGCTTGGAGAAAGCAAAAGCATCATCAGAAGACACTCTATCATGTGGGGATGTTTCTTTGAAATCCTCAGAAGGGAGAGATGTCAGTTCTATGGAGATCATGGATGATAAATCTGATGGCAAAGCACAAACTGAGGGTCAATTACACCATGAAGTCAAGGACCCACCTACCCTTTTTCGGCCAGTAGCACGCGTGAGTGCTTTTAATGTATACCACTCATTTGATGGTACGCAGCCTTCAACATCAATTCCAAGATCTGTTTCAATGCAAGGACCCGTTTTACAATCATCAAAACCAGATATGGAATTTTATAGAGCGCTTGAAGGAATTTTTGGTGACCAGTCAGTGCCTCACCAGTGTGGCCATGGCTGCTGTGCTGCTCCAAATGGTAGAAAGTCCGAAAGCTCTTTGTTGGGACCAGAATTCATTGAATTTTCGGAACCTCCATCTTTCCCAAATTTTGAGTTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGGTTGGAGAGTAGTAGTGTCAAAATAATGGGCAACACCTCTGGCAGGGTAGTATCTAATGGATCTCAAGTACATATTGGCCATTAA 1059 0.4967 MEPEETAAAAADGSGDEGLLGLDSGSGGGGRDRVKGPWSPEEDVILSRLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPAVKRKPFTDEEDQMIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVGHDTIKLESGSFMEDVSLEKAKASSEDTLSCGDVSLKSSEGRDVSSMEIMDDKSDGKAQTEGQLHHEVKDPPTLFRPVARVSAFNVYHSFDGTQPSTSIPRSVSMQGPVLQSSKPDMEFYRALEGIFGDQSVPHQCGHGCCAAPNGRKSESSLLGPEFIEFSEPPSFPNFELAAIATDISNLAWLKSGLESSSVKIMGNTSGRVVSNGSQVHIGH* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0642 352 CDD SANT 89 132 IPR001005 -
Gso3g0642 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 136 IPR017930 -
Gso3g0642 352 Gene3D - 34 86 - -
Gso3g0642 352 PANTHER - 4 329 - -
Gso3g0642 352 MobiDBLite consensus disorder prediction 1 38 - -
Gso3g0642 352 ProSiteProfiles Myb-like domain profile. 30 81 IPR001005 -
Gso3g0642 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 81 IPR017930 -
Gso3g0642 352 Gene3D - 89 135 - -
Gso3g0642 352 PANTHER MYB PROTEIN-RELATED 4 329 - -
Gso3g0642 352 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Gso3g0642 352 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Gso3g0642 352 SMART sant 34 83 IPR001005 -
Gso3g0642 352 SMART sant 86 134 IPR001005 -
Gso3g0642 352 CDD SANT 37 79 IPR001005 -
Gso3g0642 352 Pfam Myb-like DNA-binding domain 38 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0642 Gso-Chr3 18986106 18997373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0642 21 352 MYB Transcription Factor Family AT3G09230 53.061 1.85e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso3g0642 Myb_DNA-bind_6 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0642 K09422 - gmx:100813406 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0642 3 18986106 18997373 Gso3g0642 3 18986106 18997373 ECH