Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso3g0641 | ATGTCAAGTCTACAGATGTGTCATGTGGTAGATTTGGAGCAAGGGAGTCTCAGTCACCACCACCGTTCAGTGAGTGGCAGTGACATGAGCATGTGCTTTTCTGATGCTGAGAATGGTTCATGCTATTCCCATTTCTATTCAACAAATGGTGACCCTTATGATGATTACACATTTGGTTGTGTTTCTGATGCTGAGGATGGTGGTGATGTTGATTTAAGGAGGGCTTCTTCTGTCACTGATTCTGTGGAGGTGGAAATTGAAAGTGGTGCTCCTGAAATTAAGGTGCATTTAGCCAAAGTGGAGAGGGATTGCAGGATTTGTCATCTTGGTTTGGAGAGTGATGATAGTCAAGAAGAGTCCGGAGTTCCCATTGAATTGGGGTGTTCTTGTAAGGATGATTTGGGTGCTGCTCACAAGAATTGTGCTGAGGCCTGGTTCAAGATTAAGGGGAATAGGACATGTGAAATATGTCATTCTGTTGCACGGAATGTTTGTGGGGCAAATGAGGAGACAACACATACTTTGAGTGACAGCAGCAATGCTAATAATGCAGCATCCACAATCTCAACATCAACAGAACCTCGAAGATTTTGGCAAGGCCATCGCTTCCTGAATTTTCTGCTTGCTTGTATAGTTTTTGCATTTGTCATATCGTGGCTTTTTCATTTCAATATGCCCTCCTCGTAA | 687 | 0.4323 | MSSLQMCHVVDLEQGSLSHHHRSVSGSDMSMCFSDAENGSCYSHFYSTNGDPYDDYTFGCVSDAEDGGDVDLRRASSVTDSVEVEIESGAPEIKVHLAKVERDCRICHLGLESDDSQEESGVPIELGCSCKDDLGAAHKNCAEAWFKIKGNRTCEICHSVARNVCGANEETTHTLSDSSNANNAASTISTSTEPRRFWQGHRFLNFLLACIVFAFVISWLFHFNMPSS* | 229 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso3g0641 | 228 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 168 | IPR013083 | - | |
| Gso3g0641 | 228 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 96 | 164 | IPR011016 | GO:0008270 | |
| Gso3g0641 | 228 | PANTHER | OS01G0850200 PROTEIN | 6 | 227 | - | - | |
| Gso3g0641 | 228 | Pfam | RING-variant domain | 104 | 157 | IPR011016 | GO:0008270 | |
| Gso3g0641 | 228 | PANTHER | ZINC FINGER, RING-CH-TYPE | 6 | 227 | - | - | |
| Gso3g0641 | 228 | CDD | RING_CH-C4HC3_MARCH | 104 | 158 | - | - | |
| Gso3g0641 | 228 | SUPERFAMILY | RING/U-box | 101 | 161 | - | - | |
| Gso3g0641 | 228 | SMART | ringv_2 | 103 | 158 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso3g0641 | Gso-Chr3 | 18950607 | 18954888 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso3g0641 | 49 | 228 | C3H Transcription Factor Family | AT5G05830 | 53.763 | 5.26e-63 | 193 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso3g0641 | - | - | gmx:100813946 | 466.848 |
Event-related genes