Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0640 ATGGGGGCTCGTTGCTCTAAATTCTCTTTCTGCTGGTTCCACTCCCACCTCAAACCTTCTGTCCTTGAATCCTCTGACCAAGAAAATGGCGAGAAGGGTGAGAGAAAATTGTGGCCAAGTTTTGGTGAGTTCAATTTGGAGCAACTGAAGGTTGCCACAAATGGGTTCTCCTCAGAAAACATAGTGTCTGAGCATGGTGAGAAAGCTCCAAATGTTGTTTACAAAGGAAAACTTGATAATGGACAGTGGATAGCCATCAAACGTTTCAACAAGTTTGCTTGGCCTGATTCTCGCCAATTCCTCGAGGAAGCCAAACAAGTGGGGAGCCTTAGAAGTGAACGTCTAGCAAATTTGGTTGGTTATTGCTATGAAGGGGAAGAGAGGCTGCTAGTAGCAGAGTTTATGCCACATGAAACTCTGGCCAAGCATCTCTTTCATTGGGAGGCACAACCAATGAAATGGGCAATGAGGTTGAGGGTGGCTTTCTACTTAGCTCAAGCTCTAGAATATTGCACTAGTAAAGGAAGGGGTTTGTATCATGATCTCAATGCCTACAGGATCTTGTTTGATCAGGATGCTAATCCCAGGTTGTCTTGCTTTGGTCTCATGAAGAACAGTAGAGATGGCAAGAGTTACAGTACAAACCTGGCTTTCACCCCTCCTGAGTACTTAAGGACTGGTAGAGTGACTCCAGAGAGTGTGGTTTACAGTTTTGGAACTCTGCTGCTAGATCTCTTGAGTGGTAAACATATTCCACCAAGCCATGCACTTGACTTAATTCGTGGCAAAAACTTTTTGATGTTGATGGATTCTGCCTTAGAGGGTCACTTTTCAAAGGATGATGGAACTGAGTTGGTTCGTTTGGCTTCTCGTTGTTTACAATATGAAGCTCGTGAGAGGCCAAATGCAAAGTCTCTTGTTGCATCTCTTTTGTCACTTCAGAAAGAAACAGAGGTCCCTTCATATGTTCTGATGGGTCTCCAGCAAGAAACTGCATCCTCAACAAAGCAATTGTCATTGACACCTTTTGGTGAAGCTTGTTTGAGACTGGACCTTACTGCAATACATGAAATATTGGAGAAAACTGGTTACAAGGATGATGAAGGAATTGCCAATGAGCTTTCCTTTCAATTGTGGACCAGTCAAATGCAAGAGACCTTGAATTTGAAGAAGCATGGAGATACTGCTTTTAGAGCTAAGGACTTTGTTACTGCCATTGACTGCTACACTCAATTCATAGATGGAGGGACCATGGTGTCACCTACAGTGTATGCAAGACGCTGCTTATCTTATTTAATGAATGACATGGCACAAGAAGCCCTTGGGGATGCAATGCAAGCCCAAGTGGTATCTCCAGAGTGGCCTACTTCTTTGTATCTTCAAGCAGCTTGTCTTTTCAGCCTCGGAATGGAAAATGATGCACAAGAGACTCTCAAAGACGGGACTAACATGGAAGCCAGAAAAAACAAAAACTGA 1476 0.435 MGARCSKFSFCWFHSHLKPSVLESSDQENGEKGERKLWPSFGEFNLEQLKVATNGFSSENIVSEHGEKAPNVVYKGKLDNGQWIAIKRFNKFAWPDSRQFLEEAKQVGSLRSERLANLVGYCYEGEERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDANPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVASLLSLQKETEVPSYVLMGLQQETASSTKQLSLTPFGEACLRLDLTAIHEILEKTGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFVTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMAQEALGDAMQAQVVSPEWPTSLYLQAACLFSLGMENDAQETLKDGTNMEARKNKN* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0640 491 ProSiteProfiles Protein kinase domain profile. 59 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0640 491 SUPERFAMILY TPR-like 387 480 IPR011990 GO:0005515
Gso3g0640 491 Gene3D Tetratricopeptide repeat domain 383 491 IPR011990 GO:0005515
Gso3g0640 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 491 - -
Gso3g0640 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 491 IPR045845 GO:0004672|GO:0009742
Gso3g0640 491 Gene3D Transferase(Phosphotransferase) domain 1 136 327 - -
Gso3g0640 491 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
Gso3g0640 491 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Gso3g0640 491 SUPERFAMILY Protein kinase-like (PK-like) 37 320 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0640 Gso-Chr3 18940574 18945903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0640 19 310 Glycoside Hydrolase AT3G07070 32.500 4.03e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Gso3g0640 PK_Tyr_Ser-Thr 2.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0640 - - gmx:100814477 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0640 3 18940574 18945903 Gso3g0640 3 18940574 18945903 ECH