Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0636 ATGGATTTTGGTTCAAGCTTTCAAAGGCCACAATACCTTTCAAGCCTTTTCCCTAGAAATTCCTGCTTGATGCCACAAACTCAAGCAATGTTTCCATCCCAAAACTCTATTCATGTTCCACTGTCACCACCACTACCCGCCATGTTTCATCCTAACAACACTTTTCACCATTTTCAAGATCCCATCATGAATGGGCCTACTCACAACCCTCCCTTTGCAATGAATGGCCCTTTCAACCCCATCACCACCCCAATGTATGGGATACCAACCCCTGCTTTGGGTGATGGGTCTTCCTTGAGTGGCTTTGTTAACGTTCACCATCACCACCCTGTAACTTTAGCACCAAACAACAACAAAATGGAGGGGTTAGTATCCCATAACCCTTCCTTTATTATGAATGGTCCCTCCAACTCGATCACCACCCCAATGTATGGGATACCAACCCCTTCTTTGGGTGATGGGTCTTCCCTAGGTGGCTTTGTTAACATTCACCATCACCACCATGTAACGTTAGACCCAAATAACAACAAAATGGAGGCTTTATATGGTCATCACAAAGGCAAACACATATTGGATTTTTCACAGAACGCCATGATGCATCCATATGAAGCTTCTTCTTCCAAGTCACCATTGCCTTTTTCTCTCTCTAATGTGTACGAATGGGGGATAAGTGAATATCACCAGGACATTGATTGGAAGGTAAAGATGACAAATGATTCCAACATTGCTAATGATAAAATAATCAAAGGGCAGTGGACTTCAGAAGAAGACAGTGCACTTTTGGAACTCGTAAATCAATTTGGGCCGAAGAAATGGTCGCAAATTGCAAAGTTATTGCATGGTAGGATTGGTAAACAGTGCAGAGAAAGATGGTACAACCATCTTCAACCAAACATTAAGAAGGGCCCATGGAGCGTGGAGGAAGACCAAATCTTAATCGAAGCCCATAAGATATATGGGAACAAGTGGACCAAGATTGGAGAGAGGTTGCCTGGTAGGACTGAGAACACCATCAAGAATCGTTGGAATGGCACCAAGCGGCGCCAGAATTTCAAGAAGCATAACAAGAACAACCAAACCCCTTATGAAGGCTCCATGCTCCATGCCTACATTAAAAAGGTCACTGCTACTAAGTAA 1137 0.4345 MDFGSSFQRPQYLSSLFPRNSCLMPQTQAMFPSQNSIHVPLSPPLPAMFHPNNTFHHFQDPIMNGPTHNPPFAMNGPFNPITTPMYGIPTPALGDGSSLSGFVNVHHHHPVTLAPNNNKMEGLVSHNPSFIMNGPSNSITTPMYGIPTPSLGDGSSLGGFVNIHHHHHVTLDPNNNKMEALYGHHKGKHILDFSQNAMMHPYEASSSKSPLPFSLSNVYEWGISEYHQDIDWKVKMTNDSNIANDKIIKGQWTSEEDSALLELVNQFGPKKWSQIAKLLHGRIGKQCRERWYNHLQPNIKKGPWSVEEDQILIEAHKIYGNKWTKIGERLPGRTENTIKNRWNGTKRRQNFKKHNKNNQTPYEGSMLHAYIKKVTATK* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0636 378 SUPERFAMILY Homeodomain-like 247 342 IPR009057 -
Gso3g0636 378 SMART sant 248 297 IPR001005 -
Gso3g0636 378 SMART sant 300 348 IPR001005 -
Gso3g0636 378 PANTHER MYB DOMAIN PROTEIN 100-RELATED 231 360 - -
Gso3g0636 378 CDD SANT 303 343 IPR001005 -
Gso3g0636 378 CDD SANT 252 295 IPR001005 -
Gso3g0636 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 244 299 IPR017930 -
Gso3g0636 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 300 350 IPR017930 -
Gso3g0636 378 ProSiteProfiles Myb-like domain profile. 296 346 IPR001005 -
Gso3g0636 378 PANTHER MYB PROTEIN-RELATED 231 360 - -
Gso3g0636 378 Gene3D - 248 300 - -
Gso3g0636 378 Pfam Myb-like DNA-binding domain 301 343 IPR001005 -
Gso3g0636 378 Pfam Myb-like DNA-binding domain 249 295 IPR001005 -
Gso3g0636 378 Gene3D - 303 367 - -
Gso3g0636 378 ProSiteProfiles Myb-like domain profile. 244 295 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0636 Gso-Chr3 18893770 18896944 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0636 247 374 MYB Transcription Factor Family AT4G18770 60.156 4.50e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso3g0636 Myb_DNA-binding 4.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0636 K09422 - gsj:114405432 808.52