Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0596 ATGGCTGAGGGTTTTGAGGCTTACCATGTGCCACAACAAAGCAGAAGAGATAAGCTTAGAGTTGTGGCGACACAGAACCAACAACATGGTCTCATTGAGCCCTCCTCGACTTTGCTTCCTTTGTACGACCCTTCTTCTTTTATATCTTCTGATTTGTTGTTGACGAGCTTCCACAACGGCCAAAAACATAACTTGGGTGGTTGTGGTGTGAAGGAAGAACAACGTGCGAATTTGATGATGGGTTTTGCAGCAGCAGGAGGAGGAGTTGTTATGAACAATGGCTCTTCTTCTTCTTCGTGTTGTTCTTCTAACTCCTCTTCTGTTTCTTACTTGGATCCTGAATCGTCTTTGCATTTGAACCAAGCCACAATTCAGGTTATTAACAACAACAACAGCAACAACATGTTTCTCTACCAAGCACAGAACCTGAGAGAGTTTGATCAGGGTTATAATAATAACAACAACAACGACGACGACAACAATAATAGTGAGATCATGGTGTTTAAGCCTGAGCCTTTGTCTTTGTCTCTGTCATCACACAACAACGGTGTGAATCTTCAGCGATACGGATCTGTGGTTTATGGTGATAAGGTTGGTGGTGGTGGGGTGATTTATGGGAGTTCTGGTTTGAATGAGGTTTCGAGGTGCACAGTGCCAATGGGGCCATTTACTGGCTATGCTTCAATATTGAAGGGATCGAGGTTCTTGAAGCCTGCACAGCAATTATTGGAAGAGTTATGTGATGTTGGTGGGGTTTGTGCTGAGAAGATTGTGGCTGATGCATCGTTGATGGAGCCTATTCCTCCTCCACAGAGTTCAAGTGAAGATCCACTAGGGGATCATGGGGGTGATCAAGGTCGCAAAAAGTCAAGGCTCTTAACTATGCTTGATGAGGTTTACAGGAGGTACAGACAATACTATCAGCAGATGCACGCGGTAGTAACTTCATTTGAGTATGTCTCTGGCCTGAGCAATGCAGCTCCTTATGCAAGTTTGGCTATAAAAGCCATGTCCAAACATTTTAGATGCTTGAAGAATGCCATTACTGATCAACTTCAGTTTGCCAATAAAGCTCATTTTCACATCAGCAATAACAGGAAAGATGAATCTCCATGGTTTGGCAACAGTGATAAAGGCCCTTATGGCCAAAGGCCTGGGTTTCTTGAGCACCAACCTGTTTGGCGGCCTCAAAGAGGACTCCCTGAGCGCGCCGTGACTGTTCTGAGAGCTTGGTTGTTTGAGCACTTTCTGCACCCTTATCCCACTGATACCGACAAGCTAATGTTGGCCAAACAAACTGGTCTATCTCGTAGCCAGGTGTCTAATTGGTTCATTAATGCAAGAGTAAGGCTCTGGAAGCCAATGGTGGAAGAAATACATTTGCTAGAAACACGGCAAGCTCCAAAGAATCCGCAGAAGGAAGAGCATTGCAGGAACAAGCTAAGTGATCATTTGTCTTCTGATAACTCCATTGTTTCTGAGAATCCATCTACCTCCACAGATAAATTTCAGGAAGCTCCTTACAAGCACACCATAAACGAACTTCCTAATGTACCAATTAGGACTCAGGAACAGCTGAATCTACCCTGCACAAGCAATCAGCCAGGAGGAGGGGGTGTTGGAGTGAGCATGGGTGGTGGCAGTGCTAGCAATAGTGTGTCACTCACACTAGGCCTTTATCAGAATCATGGTATTGGTCTGGCTGAACCTTTCCCCTTGAATGCAGCGCAGCGATTTGGTGTTGCTCTTGATACCAACAATGAAGGCTATGTTATGAGTGGTTATGAGTCACAAAATAGGCATTTTGGAAGAGATGTCATTGGAGGACAACTGTTGCATGACTTTGTAGGCTGA 1854 0.4471 MAEGFEAYHVPQQSRRDKLRVVATQNQQHGLIEPSSTLLPLYDPSSFISSDLLLTSFHNGQKHNLGGCGVKEEQRANLMMGFAAAGGGVVMNNGSSSSSCCSSNSSSVSYLDPESSLHLNQATIQVINNNNSNNMFLYQAQNLREFDQGYNNNNNNDDDNNNSEIMVFKPEPLSLSLSSHNNGVNLQRYGSVVYGDKVGGGGVIYGSSGLNEVSRCTVPMGPFTGYASILKGSRFLKPAQQLLEELCDVGGVCAEKIVADASLMEPIPPPQSSSEDPLGDHGGDQGRKKSRLLTMLDEVYRRYRQYYQQMHAVVTSFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITDQLQFANKAHFHISNNRKDESPWFGNSDKGPYGQRPGFLEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHLLETRQAPKNPQKEEHCRNKLSDHLSSDNSIVSENPSTSTDKFQEAPYKHTINELPNVPIRTQEQLNLPCTSNQPGGGGVGVSMGGGSASNSVSLTLGLYQNHGIGLAEPFPLNAAQRFGVALDTNNEGYVMSGYESQNRHFGRDVIGGQLLHDFVG* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0596 617 Pfam Homeobox KN domain 411 450 IPR008422 GO:0003677|GO:0006355
Gso3g0596 617 MobiDBLite consensus disorder prediction 264 287 - -
Gso3g0596 617 ProSiteProfiles 'Homeobox' domain profile. 391 454 IPR001356 GO:0003677
Gso3g0596 617 SMART prehox3 224 350 IPR006563 -
Gso3g0596 617 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 16 593 - -
Gso3g0596 617 Pfam Associated with HOX 229 349 IPR006563 -
Gso3g0596 617 SMART HOX_1 394 458 IPR001356 GO:0003677
Gso3g0596 617 Gene3D - 397 459 - -
Gso3g0596 617 SUPERFAMILY Homeodomain-like 396 460 IPR009057 -
Gso3g0596 617 CDD homeodomain 394 455 IPR001356 GO:0003677
Gso3g0596 617 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 16 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0596 Gso-Chr3 16836971 16844549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0596 164 464 Homeobox Transcription Factor Family AT5G02030 58.544 3.99e-107 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso3g0596 POX 6.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0596 - - gmx:100798496 1118.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0596 3 16836971 16844549 Gso3g0596 3 16836971 16844549 ECH