Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0591 ATGTTGAGCCGCGCGGCGAATGGTGAAGTGGCTGGTTCTGGTTATAGTGGTGAGGATGAGATGTACGAGCCGCTGTGGAAGGGTTGCGCGGGACCACTGGTGGATGTTCCTCGTGTTGGCCAGAGAGTCTTCTATTTTCCACAAGGCCACATGGAGCAATTAGAGGCTTCAACAAACCAGGAACTGAATCAGAGGATTCCTTTGCTGAAGCTTCCCACGAAGATCCTTTGTCGAGTTGTGAACGTTCATTTGCTGGCTGAGCAAGAAACGGATGAGGTTTACGCGCAGATCACTTTGGTGCCGGAATCTAATCAAGATGAGCCGATGAACCCTGACCCGTGCACTGCTGAACCTCCAAGAGCACCAGTTCACTCGTTCAGCAAGGTCTTGACAGCTTCAGATACCAGCACCCATGGTGGCTTCTCTGTTCTCAGGAAACATGCCATGGAATGCCTTCCTGCGTTGGACATGTCACAACCAACACCAACTCAGGAATTGGTTGCAAAGGATCTTCATGGTTACGAATGGCGCTTTAAACATATATTTAGAGGTCAGCCGCGCAGGCACTTGCTCACGACTGGCTGGAGTACTTTTGTGACCTCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTTTGAGAGGGGACAATGGGGAATTACGCGTGGGCGTAAGACGTCTAGCTCGCCAAGCAAGTAGCATGCCTTCATCAGTGATTTCTAGTCAGAGCATGCACTTGGGAGTTCTTGCAACCGCCTCTCATGCTGTTGCAACTCAGACTCTTTTCGTAGTATATTACAAGCCAAGGACGAGCCAGTTCATCATCAGCGTGAACAAGTATTTGGAGGCTATGAACAGGTTTAGTGTTGGCATGAGGCTCAAGATGAGATTTGAGGGGGATGATTCTGCTGAGACTGACAAAAGATTTTCGGGTACCATAGTTGGAGTGGAAGATATTTCTCCTCATTGGGTAAATTCAAAATGGCGATCACTCAAGGTTCAGTGGGATGAACCTGCAGCTGTTCCCCGACCTGATAGGGTTTCACCATGGGAGATTGAACCCTTCGTTGCTTCTGCTTCTACGCCCTCAGTTCAACCTACTATGGTAAAGACTAAAAGGCCACGACCACCCAGCGAAACTCCAGATGTTGACACAACATCTGCTGCTTCTGTTTTCTGGGATGCTGGTCTTCAACAGGCTGACATGGCACAAAAAAATGTTTTGGCAGAAAGCAAACGGAATGACAGTACTGGTACATGGCATCATATGCAAACTGACATGAATAGTAAAAGCAACAGCGGCAATGCTATGTTAAGGAATCAGACAGAAGGAAGTTGGCTATCTTCTCCGCATTCTAGTTGTCCGTCTCATTTGTTTCAGGACGCAACAGATGATAGCAAGAGTGTCTCAGCCTGGCCTGTTTCAAAGCCTCACTCATCCAGATTGAACAATGATCACGTGCTTGACCAAGTTGACAAGGAGAGCAAAGTTGAGACTGCTACAAGTTATCGGTTGTTTGGAATTGATCTTATTGATCATTCTAGGAACTCTCCTTCAGTAGAGAAGGCATCTGCACAAGCAGGAAATGCACCCAAAGTTACTACTGAAGGCTGCACCAGTACCTTGACCCGAACTGATGCTGGCCATCTGTCGGATGTACCAATGGCTTCTTCCAAGGAGAGGAAACAAGAACAGCAGCAAGTATCACCAAAAGAGACTCAGAGCAAGCAAATTTGTAGAAGTCGAACCAAGGTTCAAATGCAAGGTGTTGCAGTGGGTCGTGCTGTCGATTTGACCATGTTGGATGGATATGATCAACTTATAAATGAATTGGAGGAGATGTTTGACATAAAGGGACAACTTCAACACCGGAATAAGTGGGAAATTGTCTTCACTGACGATGAAGGTGACATGATGCTTGTTGGAGATGATCCATGGCCTGAATTCTGTAATATGGTGAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAAGATGAGTTGTGGAAGCAAACTGCCGATCTCCTCAGTGGAAGACGGGACTGTAATAAGCTCAGACACAACCGAAACCTGA 2076 0.4687 MLSRAANGEVAGSGYSGEDEMYEPLWKGCAGPLVDVPRVGQRVFYFPQGHMEQLEASTNQELNQRIPLLKLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQDEPMNPDPCTAEPPRAPVHSFSKVLTASDTSTHGGFSVLRKHAMECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRRLARQASSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKYLEAMNRFSVGMRLKMRFEGDDSAETDKRFSGTIVGVEDISPHWVNSKWRSLKVQWDEPAAVPRPDRVSPWEIEPFVASASTPSVQPTMVKTKRPRPPSETPDVDTTSAASVFWDAGLQQADMAQKNVLAESKRNDSTGTWHHMQTDMNSKSNSGNAMLRNQTEGSWLSSPHSSCPSHLFQDATDDSKSVSAWPVSKPHSSRLNNDHVLDQVDKESKVETATSYRLFGIDLIDHSRNSPSVEKASAQAGNAPKVTTEGCTSTLTRTDAGHLSDVPMASSKERKQEQQQVSPKETQSKQICRSRTKVQMQGVAVGRAVDLTMLDGYDQLINELEEMFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSCGSKLPISSVEDGTVISSDTTET* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0591 691 SUPERFAMILY CAD & PB1 domains 582 656 - -
Gso3g0591 691 MobiDBLite consensus disorder prediction 517 547 - -
Gso3g0591 691 SMART B3_2 126 228 IPR003340 GO:0003677
Gso3g0591 691 MobiDBLite consensus disorder prediction 517 580 - -
Gso3g0591 691 Gene3D - 286 361 - -
Gso3g0591 691 MobiDBLite consensus disorder prediction 442 461 - -
Gso3g0591 691 ProSiteProfiles PB1 domain profile. 580 661 IPR000270 GO:0005515
Gso3g0591 691 Pfam Auxin response factor 252 332 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso3g0591 691 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 680 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso3g0591 691 SUPERFAMILY DNA-binding pseudobarrel domain 117 255 IPR015300 -
Gso3g0591 691 MobiDBLite consensus disorder prediction 410 437 - -
Gso3g0591 691 Pfam AUX/IAA family 623 664 IPR033389 -
Gso3g0591 691 Pfam AUX/IAA family 558 616 IPR033389 -
Gso3g0591 691 PANTHER AUXIN RESPONSE FACTOR 16 680 - -
Gso3g0591 691 MobiDBLite consensus disorder prediction 468 487 - -
Gso3g0591 691 Gene3D - 575 668 - -
Gso3g0591 691 Pfam B3 DNA binding domain 126 226 IPR003340 GO:0003677
Gso3g0591 691 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Gso3g0591 691 MobiDBLite consensus disorder prediction 361 385 - -
Gso3g0591 691 Gene3D - 123 227 IPR015300 -
Gso3g0591 691 CDD B3_DNA 124 226 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0591 Gso-Chr3 16718088 16722735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0591 17 673 B3 DNA Binding Superfamily AT4G23980 58.621 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso3g0591 B3 6.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0591 K14486 - gmx:100779003 1385.16