Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0572 ATGGAACAGGGTCAATGTTGGACAAAGAAGAAGAAGTACTCTTTGAACAGCACTAGTCTTGGTTCACCAACAAACCCTTCCTATGGTGACTCATGGGAAGAACAAGCTTTTGCAGAAGATGCAGCTAATTCTCTTGGTGGCTGCATATGGCCTCCAAGATCATACTCTTGTAGCTTTTGCAGAAGAGAGTTCAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCTAGCCCCCACAATGAAATTCTATGCCGTCATGACCTTGAAACTCAGCTCCATAATAAGCCAGTTCATCAAAGTTCTTTTGCTTCTTTGGGTGGTTACCTATACCCCTCTCCTGTTTGTGGATTGGCTTATAAAAAAACTAACCCTAATTCTGATCCTGATTTTGTTGCTTCACCTTCTTCATCACCCTCACTTTCCAAGGCCTTATTGGCTCCATCAGTGAATATTGGTACCTTCAGAGAGGAAACCATGATTCCACTTTATGATTCCTCTATTCTCCACGAGATTTCTCCTGCGAGTAATAATTCTTCTGAATCATGGCCAAATTCAGCTGAAGATCATAGATTATATTCATGTAAGTTCTACCCTCAAGCTGATACAAAGAAAGCCTCCAAGGAAATAATGGATTCTAGATATAGGGATAATAAGGGGAATAATGATGATATTGATGGGGATATGAGCTTGAATTCAGTTGTGTATAGAACATACCCATCTTTGCAGTTTGAGAGTACTAAAGAGCCAGATCATATCAGTTGCAAGAAAAGGAAAACAGATGCTTCCTCAACTCTATTTTCCTCACAGTCAAGCTCAGTTGATAGGCATCACGTGAAACCAAAGATGTTTGAGTTTAGCCCTAGCTCAATAGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAGGTCCAAGGTATAG 957 0.4117 MEQGQCWTKKKKYSLNSTSLGSPTNPSYGDSWEEQAFAEDAANSLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHNEILCRHDLETQLHNKPVHQSSFASLGGYLYPSPVCGLAYKKTNPNSDPDFVASPSSSPSLSKALLAPSVNIGTFREETMIPLYDSSILHEISPASNNSSESWPNSAEDHRLYSCKFYPQADTKKASKEIMDSRYRDNKGNNDDIDGDMSLNSVVYRTYPSLQFESTKEPDHISCKKRKTDASSTLFSSQSSSVDRHHVKPKMFEFSPSSIEELDLELRLGNRSKV* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0572 318 MobiDBLite consensus disorder prediction 262 286 - -
Gso3g0572 318 Pfam C2H2-type zinc finger 55 79 - -
Gso3g0572 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Gso3g0572 318 PANTHER OS07G0101800 PROTEIN 1 318 - -
Gso3g0572 318 MobiDBLite consensus disorder prediction 272 286 - -
Gso3g0572 318 Gene3D Classic Zinc Finger 52 110 - -
Gso3g0572 318 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
Gso3g0572 318 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Gso3g0572 318 SMART c2h2final6 55 77 IPR013087 -
Gso3g0572 318 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0572 Gso-Chr3 15016681 15018368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0572 33 91 C2H2 Transcription Factor Family AT5G06070 76.667 3.20e-25 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g0572 zf-C2H2_6 1.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0572 - - gmx:100804148 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0572 3 15016681 15018368 Gso3g0572 3 15016681 15018368 ECH