Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0556 ATGGCCAACCTCAACATGCTCCTCCAACAATTCTTGCATGTGTTGTTGTTCCTTCTGATCCCTGTTTCATCTCAGCCTAACCAGCTCTTCTATGATGGATTCTTGGGAAGCAACATCATGTCCCTTAGAGGAGTAGCAGAAATAGAGTCAAATGGGATACTGAAACTCACAGATGATTCAAGTAGAGTAGTGGGTCAAGCTTTTTATCCAACTGGTTTAAGGTTCAAGAACTCTAGTGATGGTAAAGCTTTCTCCTTTTCTTCTTCTTTTGCTTTGATTATATTCCCTGAGTATGAAAAGTTAGGAGGGCATGGTCTTGCTTTTACAATTGCATCTTCTAAGAATCTCAAGGCTCTTCCAAGTCAGTATCTTGGTCTTCTAAACTCAACTAGCACAGGGAACTCCTCCAACCACCTCTTTGCTGTTGAGTTTGACACTGCCCAAGATTTTGAGTTTGGGGACATTGATGACAACCATGTTGGAATTGACATCAATAGCTTGGTCTCCATTGCTTCTGCACCTGTAGGTTACTACACCGGGGGTGATGATAATTCAACCAAACAGAATCTCACGCTCACAAGTGGGGAACCCATTATAGCTTGGGTTGATTATGATGCTTCTCAAAGTATTGTCAATGTTACAATTTCTGAATCTTCTACCAAACCAAAGAGACCTCTCTTGTCCCATCATGTGGACCTTTCACCAATCTTTGAGGATTTAATGTTTGTTGGGTTCTCTGCATCAACAGGGTTGCTTGCTAGCTCCCATTACATCTTGGGTTGGAGCTTCAAGATCAATGGACCAGCTCCACCCCTTGAGCTCTCTTCTCTCCCACAGCTTCCAGGCCCAAAGAAGAAACACACATCTCTGATAACTGGGGTTTCAATTTCTGGTTTTCTTGCATTGTGTGGTTTCTTATTTGGCATCTACATGTACAGGAGGTACAAGAATGCTGATGTCATAGAAGCTTGGGAGCTTGAGATTGGGCCACATAGGTACTCCTATCAAGAGCTCAAGAAAGCAACAAAAGGGTTCAAGGACAAAGAGCTGCTTGGACAAGGTGGGTTTGGTAGTGTTTACAAAGGAACATTGCCAAATTCCAATACCCAAGTTGCTGTTAAGAGAATTTCACATGACTCCAAACAAGGCCTTAGGGAATTTGTGTCAGAAATAGCCAGCATAGGCCGGCTTCGCCACCGGAATTTGGTTCCGTTGCTGGGGTGGTGTCGCCGCCGTGGTGACCTCCTCCTTGTGTATGATTTCATGGAAAATGGGAGCTTAGATAAGTACTTGTTTGATGGGCCAAAAACAATCTTAAGTTGGGAGCAAAGGTTTAAGGTCATCAAGGATGTTGCTTCAGCCCTTTTGTATCTTCATGAGGGCTATGAGCAGGTGGTGATACATAGAGATGTGAAGGCTAGCAATGTGCTTCTAGATGGTGGACTCAATGGAAGATTAGGAGATTTTGGATTAGCAAGGTTGTATGAACATGGGGCTAACCCAAGTACCACAAGGGTGGTGGGGACCTTTGGCTATATGGCACCTGAGGTGCCTAGGACAGGGAAGTCCACTCCTAACTCAGATGTTTTTGCATTTGGTGCACTTTTACTAGAAGTGGCATGTGGGCTCAGACCACTTGAGCCAAAGGCGTTGCCAGAAGATGTGGTTTTGGTTGATTGTGTGTGGAACAAGTACAAACAAGGGAGAATACTTGATTTGGTGGATCCTAAACTAAATGGTGCTTTTAATGAAAGAGAGGTTCTCATGGTGTTGAAATTGGGAATTCTATGTTCAAATGCCGCACCCGCGGCTAGGCCGAGCATGAGACAGGTGGTGAGGTTTTTGGATGGAGAAGTTGGATTGCCAGATGAGTTGAGAAAGCCAGAAGAGGTAGGATATCAGGAGGGTTTTGATGAATTCATGAACTCACTTGAACCTTCTTCCTTTTATCAGATGAGCACAAGTTCCTATGCTATAAAGACTGACATGGATGCTAGGTTTCCTTTTATTGATACATCACTTTATACTCTCCATGCTAGAGGAGAAACAAGGTGA 2055 0.438 MANLNMLLQQFLHVLLFLLIPVSSQPNQLFYDGFLGSNIMSLRGVAEIESNGILKLTDDSSRVVGQAFYPTGLRFKNSSDGKAFSFSSSFALIIFPEYEKLGGHGLAFTIASSKNLKALPSQYLGLLNSTSTGNSSNHLFAVEFDTAQDFEFGDIDDNHVGIDINSLVSIASAPVGYYTGGDDNSTKQNLTLTSGEPIIAWVDYDASQSIVNVTISESSTKPKRPLLSHHVDLSPIFEDLMFVGFSASTGLLASSHYILGWSFKINGPAPPLELSSLPQLPGPKKKHTSLITGVSISGFLALCGFLFGIYMYRRYKNADVIEAWELEIGPHRYSYQELKKATKGFKDKELLGQGGFGSVYKGTLPNSNTQVAVKRISHDSKQGLREFVSEIASIGRLRHRNLVPLLGWCRRRGDLLLVYDFMENGSLDKYLFDGPKTILSWEQRFKVIKDVASALLYLHEGYEQVVIHRDVKASNVLLDGGLNGRLGDFGLARLYEHGANPSTTRVVGTFGYMAPEVPRTGKSTPNSDVFAFGALLLEVACGLRPLEPKALPEDVVLVDCVWNKYKQGRILDLVDPKLNGAFNEREVLMVLKLGILCSNAAPAARPSMRQVVRFLDGEVGLPDELRKPEEVGYQEGFDEFMNSLEPSSFYQMSTSSYAIKTDMDARFPFIDTSLYTLHARGETR* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0556 684 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 9 662 - -
Gso3g0556 684 SMART serkin_6 345 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0556 684 ProSitePatterns Protein kinases ATP-binding region signature. 351 374 IPR017441 GO:0005524
Gso3g0556 684 Pfam Protein tyrosine and serine/threonine kinase 348 615 IPR001245 GO:0004672|GO:0006468
Gso3g0556 684 SUPERFAMILY Protein kinase-like (PK-like) 327 647 IPR011009 -
Gso3g0556 684 Pfam Legume lectin domain 30 277 IPR001220 GO:0030246
Gso3g0556 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Gso3g0556 684 Gene3D - 30 273 - -
Gso3g0556 684 Gene3D Transferase(Phosphotransferase) domain 1 422 629 - -
Gso3g0556 684 Gene3D Phosphorylase Kinase; domain 1 330 421 - -
Gso3g0556 684 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 285 IPR013320 -
Gso3g0556 684 PANTHER - 9 662 - -
Gso3g0556 684 CDD STKc_IRAK 351 617 - -
Gso3g0556 684 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0556 684 CDD lectin_legume_LecRK_Arcelin_ConA 31 267 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0556 Gso-Chr3 14393315 14395731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0556 40 666 Receptor kinase-like Gene Family AT3G55550 56.528 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso3g0556 PK_Tyr_Ser-Thr 3.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0556 - - gmx:100808942 1305.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0556 3 14393315 14395731 Gso18g1654 18 48480280 48482478 PCT