Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0539 ATGACAATGAATCCACATCTTACGGGGTTTTCTGGTTCAACAAATCAATCTTTTCCAATTCTTCAAAATCAGAGATTTGATAATGGACCCAGATTTGAAAATCTCTTCTTTGATCAAAGTAGGAATTTTGATCTACAATGTGATCCAAATTTAATACCAGCTAACACACCCTCATCCTCCACTGTGACCCATGAGGAGCATTCTCCCGAGGACTGTGATTTTTCTGATGCAGTTTTGAGTTACATCAGCCAGATCCTCATGGAGGAAGACTTAGAGGACAATACATGCATGGTTCAAGATTCTTTAGATATTCAAGCAGCGGAGAAATCATTCTATGAGGTTCTTGGTGAAAAGTACCCACCTTCTCCAAGAAACACAAGCCTTATGAATGATGGGGTTGGAGGTTATGACTTCTCTGGAGATTATGGCAATTGTCCTGATACTAATGGAGATCTCATGAGCATTTTTACTAACCAGTTTTTGCCACCAAACTCAGGTAGTTTTCCTGCTCATAGTCTTCATGGTGATGGCATTTCACATTCTTCTTACAACCCTTCGAATAGTGTGGAAGGGCTTGTAAATTCTTCAAAAAGTATAATTCAGGTTCCTGATCTGAACAGTGAAAGTGAATCCATTTGGCAATTTCAGAAAGGTGTTGAGGAGGCTAGTAAGTTTCTTCCTAGTGCAAATGGGCTGTTTGCTAATTTGTCAGAACCAGAGCCAAAGGAAGGAAAGGATGAATTATCATTTAAAGTGGAGAAGGAGGAGGGGGAATATGTTAATGGTGGATCCAAGGGAAGGAAACATCCTCAGATAGATGAAGCAGATGATGAGGAAAACAGAAGCAGCAAGCAAGCAGCAATTTATTCTGAACCAACATTGCGGTCAGATATGGCTGATATAATCCTTCTTCACAGCACCGGGGATGGTAAGGACCACTTTGTGGCTCGCCGTGAGGCTTTGCAGAATAAAACACAGAAGTCAGTGTTGCCAAAAGGTCAATCAAAAGCATCGAGCAGTGGGAAGGGGCGCGGTAAGAAGCAAGGTGGGAGGAAGGAGGTTGTCGATTTGAGAACACTTCTGTTTCTATGTGCACAAGCTGTTGCAGCAGATGACCATAGAAATGCCAATGAATTGCTAAAGCACATCAGGCAACACTCAACCCCTTTTGGAGATGGAAATCAGAGATTGGCTCATATCTTTGCAGATGGCCTTGAGGCACGTTTGGCTGGTACTGGCAGCCAAATTTACAAAGGACTTGTTGGCAAAAGAACATCAGCTGCTAATTATCTAAAAGCTTATCATCTATACCTTGCTGCATGCCCCTTTAGGAAAATTTCTAAGTTTACCTCAAACATCACAATAAGGGAATCTTCAGCACAGTCAATGAAGGTCCATGTTATAGATTTTGGCATCTTTTATGGTTTCCAATGGCCAACTTTTATACAGCGGCTTTCATGGAGAGCAGGAGGACCACCAAAGCTACGGATAACAGGAATAGACTTCCCACAACCTGGTTTCAGGCCAGCAGAAAGAATTCTAGAAACGGGACGCCGCTTGGCAGCGTATGCTGAAGCCTTTAATGTTCCATTTGAGTACAAAGCCATAGCAAAAAAATGGGACACGATTCAACTTGAGGAACTTGAGATTGACAGGGATGAGTTCCTTGTTGTTACTTGTTTCTATAGAGGTAAGAACCTTCTGGATGAATCTGTGGTAGTGGACAGTCCAAGAAATAATTTCCTTACCCTGATTAGGAGAATCAACCCAAAGTTATTCATTCATGGCATCATGAATGGGGCATTCGATGCCCCTTTCTTTGTTACCAGATTCCGGGAGGCATTGTTTCACTACTCATCTTTGTTTGATATGCTTGAGACTATTGTGCCTCGTGAGGACTGGGAGAGGATGCTGATAGAGAAAGAGATATTCGGGCGGGAAGCATTGAATGTCATAGCTTGTGAAGGGCCTGAAAGAGTGGAGAGGCCAGAGAGCTACAAGCAGTGGCAAGCACGCATTCTGCGGGCAGGATTTGTGCAGCAATCTTTCGATCGCAGGACAGTGAAGATGGCAATGGAGAAAGTGAGGGGTAGCTACCACAAGGATTTTGTGATTGATGAAGATAGCCAGTGGTTGTTGCAAGGTTGGAAGGGGCGTATCATTTATGCCCTTTCTTGTTGGAGACCTGCATGA 2193 0.4309 MTMNPHLTGFSGSTNQSFPILQNQRFDNGPRFENLFFDQSRNFDLQCDPNLIPANTPSSSTVTHEEHSPEDCDFSDAVLSYISQILMEEDLEDNTCMVQDSLDIQAAEKSFYEVLGEKYPPSPRNTSLMNDGVGGYDFSGDYGNCPDTNGDLMSIFTNQFLPPNSGSFPAHSLHGDGISHSSYNPSNSVEGLVNSSKSIIQVPDLNSESESIWQFQKGVEEASKFLPSANGLFANLSEPEPKEGKDELSFKVEKEEGEYVNGGSKGRKHPQIDEADDEENRSSKQAAIYSEPTLRSDMADIILLHSTGDGKDHFVARREALQNKTQKSVLPKGQSKASSSGKGRGKKQGGRKEVVDLRTLLFLCAQAVAADDHRNANELLKHIRQHSTPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVGKRTSAANYLKAYHLYLAACPFRKISKFTSNITIRESSAQSMKVHVIDFGIFYGFQWPTFIQRLSWRAGGPPKLRITGIDFPQPGFRPAERILETGRRLAAYAEAFNVPFEYKAIAKKWDTIQLEELEIDRDEFLVVTCFYRGKNLLDESVVVDSPRNNFLTLIRRINPKLFIHGIMNGAFDAPFFVTRFREALFHYSSLFDMLETIVPREDWERMLIEKEIFGREALNVIACEGPERVERPESYKQWQARILRAGFVQQSFDRRTVKMAMEKVRGSYHKDFVIDEDSQWLLQGWKGRIIYALSCWRPA* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0539 730 MobiDBLite consensus disorder prediction 322 342 - -
Gso3g0539 730 MobiDBLite consensus disorder prediction 256 290 - -
Gso3g0539 730 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 36 729 IPR005202 -
Gso3g0539 730 Pfam GRAS domain family 357 728 IPR005202 -
Gso3g0539 730 MobiDBLite consensus disorder prediction 322 351 - -
Gso3g0539 730 ProSiteProfiles GRAS family profile. 348 728 IPR005202 -
Gso3g0539 730 PANTHER SCARECROW-LIKE PROTEIN 9 36 729 - -
Gso3g0539 730 MobiDBLite consensus disorder prediction 256 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0539 Gso-Chr3 12506207 12509620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0539 70 729 GRAS Transcription Factor Family AT2G37650 54.373 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso3g0539 GRAS 5.7e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0539 - - gmx:100780785 1458.35