Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0515 ATGGACGAAATTGAAATCCTTGCCCATTTCCTCTGCCCTATTTCCCTTCAACTCATGAGGGACCTTGTCACAGTTTGCACAGGAATCACTTATGATAGAGAAAACATAGAAAGATGGTTATTTTCATGCAAGAACAACACATGCCCCGTTACTAAGCAGTGCCTATTAGACCATGGTCTCACTCCAAACCACACTCTACGCAGGCTGATCCAATCCTGGTGCACCCTCAATGCCTCACTTGGAGTTGAACGCATTCCTACTCCAAAGTCACCAATAGGCAAAACTGAGATTGTGAAACTCCTCACAGAAGCAAAAGGGTTCCCAGAGAAGCAACTCAAGTGCCTCACAAGGCTTCGATCCGTTGCCTTTGAAGGCCAAAGGAACAAAACATGTTTAGAGTCTGTTGGAGTAATAGAATTCTTGGCCACAACAATGAATATATCAGCACCAATATTGTGGGGAAAAGATTCAGTCCACATGGGCGTAATTATTTGCGAGTATTTCACCCACCTTTTCACTCTTTTCTGA 528 0.4375 MDEIEILAHFLCPISLQLMRDLVTVCTGITYDRENIERWLFSCKNNTCPVTKQCLLDHGLTPNHTLRRLIQSWCTLNASLGVERIPTPKSPIGKTEIVKLLTEAKGFPEKQLKCLTRLRSVAFEGQRNKTCLESVGVIEFLATTMNISAPILWGKDSVHMGVIICEYFTHLFTLF* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0515 175 Pfam U-box domain 9 75 IPR003613 GO:0004842|GO:0016567
Gso3g0515 175 PANTHER OS11G0573500 PROTEIN 5 146 - -
Gso3g0515 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Gso3g0515 175 PANTHER WDSAM1 PROTEIN 5 146 IPR045185 GO:0061630
Gso3g0515 175 SUPERFAMILY RING/U-box 3 77 - -
Gso3g0515 175 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Gso3g0515 175 CDD RING-Ubox_PUB 10 53 IPR045210 -
Gso3g0515 175 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0515 Gso-Chr3 10317427 10317954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0515 2 146 U-box Gene Family AT2G35930 62.759 2.24e-60 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0515 - - gmx:102664504 360.918