Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0467 ATGGGTGTGGACTATTACAAACTTCTTCAGGTGGATCGTAATGCCAGTGATGAGGATCTCAAGAAAGCCTATCGCAAGCTTGCTATGAAGTGGCACCCTGATAAGAACCCTAACAACAAAAGAGACGCTGAAGCCAAATTCAAGCAAATCTCAGAAGCCTATGATGTTTTGAGTGATCCGCAAAAGAGGGGTGTGTATGATCAGTATGGTGAGGAGGGATTGAAAGGGCAGGTGCCACCCCCAGGTGCTGGTGGTTTTTCCGGTGGCAGTGATGGCGGACCGACGATGTTCCGGTTCAACCCGAGAAGTGCAGATGATATATTCTCGGAGTTTTTTGGGTTTTCAAGTCCCTATGGAATGGGGGATATGGGTGGCCGTGCTGGCCCATCTGGCTATCCCAGATTTGCGGATGACCTTTTTGCTTCTTTTAGTAGGAGTGCGGCTGGAGAAGGCTCCAGCAATGTGCCAAGGAAAGGTGCGCCGATTGAGAAAACATTGCAATGCAGTTTGGAGGATTTGTACAAAGGGACTACCAAAAAAATGAAGATTTCCAGGGATGTGATTGATTCCAGTGGGAGGCCCACCACTGTAGAGGAAATTCTAACCATTGAGATCAAGCCGGGCTGGAAGAAAGGAACAAAAATAACTTTTCCTGAGAAGGGAAATGAACAAAGAGGAGTTATACCATCTGATCTTGTTTTTATCATTGATGAGAAACCTCATGGTGTCTTCAAAAGGGATGGCAATGATCTTGTTATCACACAGAAGATATCTCTAGTTGAAGCTCTGACCGGTTACACAGCACAACTGATGACACTTGATGGGAGGAATCTTACAGTCTCCACCAATTCCATCATCAGTCCGACGTACGAAGAAGTTATTAAAGGAGAGGGTATGCCAATTCCCAAGGAACCTTCCAAAAAGGGAAACTTGAGGATCAAGTTCAATATCAAGTTCCCCTCTAGACTCACATCAGAGCAGAAAACCGGCATTAAACGATTATTGACATCTTAA 1014 0.4527 MGVDYYKLLQVDRNASDEDLKKAYRKLAMKWHPDKNPNNKRDAEAKFKQISEAYDVLSDPQKRGVYDQYGEEGLKGQVPPPGAGGFSGGSDGGPTMFRFNPRSADDIFSEFFGFSSPYGMGDMGGRAGPSGYPRFADDLFASFSRSAAGEGSSNVPRKGAPIEKTLQCSLEDLYKGTTKKMKISRDVIDSSGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPSDLVFIIDEKPHGVFKRDGNDLVITQKISLVEALTGYTAQLMTLDGRNLTVSTNSIISPTYEEVIKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKTGIKRLLTS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0467 337 Pfam DnaJ domain 4 67 IPR001623 -
Gso3g0467 337 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gso3g0467 337 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gso3g0467 337 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gso3g0467 337 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gso3g0467 337 SMART dnaj_3 3 62 IPR001623 -
Gso3g0467 337 Gene3D - 161 239 - -
Gso3g0467 337 CDD DnaJ 4 59 IPR001623 -
Gso3g0467 337 SUPERFAMILY HSP40/DnaJ peptide-binding domain 243 329 IPR008971 GO:0006457|GO:0051082
Gso3g0467 337 Gene3D - 241 321 - -
Gso3g0467 337 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 337 - -
Gso3g0467 337 CDD DnaJ_C 160 323 - -
Gso3g0467 337 Gene3D DnaJ domain 3 123 IPR036869 -
Gso3g0467 337 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Gso3g0467 337 MobiDBLite consensus disorder prediction 73 96 - -
Gso3g0467 337 Pfam DnaJ C terminal domain 162 320 IPR002939 -
Gso3g0467 337 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gso3g0467 337 SUPERFAMILY HSP40/DnaJ peptide-binding domain 162 241 IPR008971 GO:0006457|GO:0051082
Gso3g0467 337 PANTHER BNAANNG28460D PROTEIN 1 337 - -
Gso3g0467 337 SUPERFAMILY Chaperone J-domain 3 97 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0467 Gso-Chr3 8360521 8365462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0467 4 67 Miscellaneous Gene Families AT5G49580 48.485 1.92e-08 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0467 3 8360521 8365462 Gso3g0467 3 8360521 8365462 ECH
Gso18g1622 18 47844308 47848766 Gso3g0467 3 8360521 8365462 PCT
Gso7g1275 7 18172003 18176360 Gso3g0467 3 8360521 8365462 PCT
Gso3g0467 3 8360521 8365462 Gso18g1622 18 47844308 47848766 PCT
Gso3g0467 3 8360521 8365462 Gso7g1275 7 18172003 18176360 PCT