Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0466 ATGGAAATGGCTTCCACTCCCCGCACCGTCGAAGAGATCTTCAAGGACTACACTGCCCGCAGAACCGCCATCGTTCGCGCTCTCTCTCAAGATGTGGATGAATTCTACGGACTCTGCGATCCAGATAAGGAGAACTTGTGCCTCTATGGACATCCGAATGAAACATGGGAGGTGACTTTGCCGGCAGAGGAAGTTCCTCCGGAGCTTCCGGAGCCTGCACTCGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCGTGGTTGCTCTCTGTGGCCTTCTATCTTGGAGCTCGTCTTAACCGCAACGAAAGGAAACGTTTATTTAGCTTGATCAATGATCTTCCTACTGTTTTTGAAGTTGTGACTGAGAGGAAGCCAGTAAAGGACAAGCCCACTGCAGACAGTGGAAGCAAGTCTAGAGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAGAGCAACCCAAAGTTTGCAGATGATGGTTATGAAGACGAGGATGATGAGCACAGTGAAACCCTTTGTGGGAGCTGTGGCGGAAATTACAATGCAGATGAATTTTGGATTGGCTGCGATATATGTGAGAGGTGGTTCCATGGGAAATGTGTGAAGATCACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGTCCATCATGCAGCTTGAGGCGAGGCAGGCCCTAA 720 0.4917 MEMASTPRTVEEIFKDYTARRTAIVRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPVKDKPTADSGSKSRGSTKRSSDGQVKSNPKFADDGYEDEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0466 239 MobiDBLite consensus disorder prediction 148 165 - -
Gso3g0466 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Gso3g0466 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
Gso3g0466 239 MobiDBLite consensus disorder prediction 137 176 - -
Gso3g0466 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Gso3g0466 239 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 3 238 - -
Gso3g0466 239 SMART PHD_3 185 233 IPR001965 -
Gso3g0466 239 CDD PHD_AL_plant 185 235 IPR044104 -
Gso3g0466 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Gso3g0466 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Gso3g0466 239 Pfam PHD-finger 186 233 IPR019787 -
Gso3g0466 239 PANTHER CPG BINDING PROTEIN 3 238 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0466 Gso-Chr3 8314139 8317605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0466 4 238 Alfin-like Transcription Factor Family AT5G05610 77.966 9.58e-122 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gso3g0466 Alfin 7.6e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0466 - - gmx:100779170 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0466 3 8314139 8317605 Gso3g0466 3 8314139 8317605 ECH
Gso18g1623 18 47855752 47860462 Gso3g0466 3 8314139 8317605 PCT
Gso7g1276 7 18181586 18185483 Gso3g0466 3 8314139 8317605 PCT
Gso3g0466 3 8314139 8317605 Gso18g1623 18 47855752 47860462 PCT
Gso3g0466 3 8314139 8317605 Gso7g1276 7 18181586 18185483 PCT