Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0455 ATGGGGTGGGGATGGGTTTATGGTTTCCCATCCTTATATCCGATTCTCCAAGTTTGGTTTTGTTCTGTTGTTCGGCTTGGCTGTGAGAAGAAAAGTTTTTCTTTGGTTGAGAAGTTTCTTTTGGAGTTTTCTTTTGCTCCGTTGTTGGGTTTGACTGTTGTTAACTTTGGTTTCCAGTGGTTGAGGTGGCTTTGCGATTATAAAGTTATGGCATGTGTTGCTAATAAAATTAAGTTGATAGATGGATCAAGGGAAGCTCTTAAGCTTTCTATAAGGATCACTGATCTTTGGTTCATTGGGATTCCCAAAAAGTCTGAACAAGCCGAAATGGTGGTTGTTGATTCTGATGGAGATGAAATCCATGTTGTTTGCAAACAGGATCAGTTGAAGTCTCACAAGGTTGGTTTGAAGGAAAATTTGACTTATGTGATGCATAATTTTAAAGTTATGAAGAATGACGGGAAATTCAGAGTTTGTGATCATGAATATAAATTATGTTTTACTAGAGTTACTGTTGTTAGGCAATCTGATATGGAACACTTACCTTTTAGGAAATTCAAATTTGTTGATTTTTCTAGTGTCATTGCTGGTCATTTTCAAACTGGACTCTTGGTTGATGTTATTGGCGTGGTTGATGAAGTGATATTCCGATATGTGTCATCGAAAAATACGAGGGTTGTTTTCAAATTAAAGGATTTGAGTGGACAGGTGCTATCCTGCACACTTTGGGAAAATTACTGCTTACAGTTTTTGTCTTATTTGAATGAGGTTGAAGATGAAAGGCCGATTGTTATTCTTTTGACACATGCCAGGATTAAGGAAGCGCAGGGATCATATCCGCCGTCGGTCACTAATTCTTTCAAGGCATCTAAACTCATGATTAACAACCTTGTGCTGGAAATTCAAGAATTTAGAGAGAGCCTTTTAGATTTAGGGATCGAGGTTAGATCGGTTTTGACGCCTATTGGACAAGCGAGTTCACAGGTTTTAGGGTCATCTCAATTATCATCAAAAGATGCATTTCTGTCAAAGGCTGAAGTGAAAAATATCTCTCAGATTAATGCCATTTCCGAGGTGATGTATAGAGTTGAAGTGATGGTTAATCACAAGGGTGAACAGACCAAATTTTTTATCTGGGACCGTGAATGTGCACAGTTAATTGGTCAATCAGCGGATGAAGTCAACAGGCTCAAAATAGAAGATGGCGATGTTGATTTAAATGCCTCTCCTCAAGCACTAGATAGGCTATTGGGTTGTTTCCTTGCATTCAAAGTGAAGGTGCAACCAAGGTTCAGGAATTCTATTGTTCTTAAATATTCAGATGAATCAGACTTGGTCAATGCTGTCCTGGATATGCTTCCCGATAGTGAGCCATGTTGCAAGATCGAGAATTCAATACTTGAGTCGACCGATCCTACAGAGCTTGAATCTCAATTTGTGTTTGTTACCACTGATCATGATCGTTCAATGCTTGACTCAAGTGAGCCTATAGAGCTTGAATATGGTAATATTGCAGCACATGCCATAATCCTTTCGGGTTATAAATATGATTGA 1554 0.3855 MGWGWVYGFPSLYPILQVWFCSVVRLGCEKKSFSLVEKFLLEFSFAPLLGLTVVNFGFQWLRWLCDYKVMACVANKIKLIDGSREALKLSIRITDLWFIGIPKKSEQAEMVVVDSDGDEIHVVCKQDQLKSHKVGLKENLTYVMHNFKVMKNDGKFRVCDHEYKLCFTRVTVVRQSDMEHLPFRKFKFVDFSSVIAGHFQTGLLVDVIGVVDEVIFRYVSSKNTRVVFKLKDLSGQVLSCTLWENYCLQFLSYLNEVEDERPIVILLTHARIKEAQGSYPPSVTNSFKASKLMINNLVLEIQEFRESLLDLGIEVRSVLTPIGQASSQVLGSSQLSSKDAFLSKAEVKNISQINAISEVMYRVEVMVNHKGEQTKFFIWDRECAQLIGQSADEVNRLKIEDGDVDLNASPQALDRLLGCFLAFKVKVQPRFRNSIVLKYSDESDLVNAVLDMLPDSEPCCKIENSILESTDPTELESQFVFVTTDHDRSMLDSSEPIELEYGNIAAHAIILSGYKYD* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0455 517 Pfam Domain of unknown function DUF223 109 201 IPR003871 -
Gso3g0455 517 Gene3D - 74 175 IPR012340 -
Gso3g0455 517 CDD RPA1_DBD_A_like 88 173 - -
Gso3g0455 517 PANTHER REPLICATION FACTOR A 1, RFA1 80 397 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso3g0455 517 CDD RPA1_DBD_B_like 206 308 - -
Gso3g0455 517 Gene3D - 180 313 IPR012340 -
Gso3g0455 517 Gene3D - 341 450 IPR012340 -
Gso3g0455 517 SUPERFAMILY Nucleic acid-binding proteins 106 174 IPR012340 -
Gso3g0455 517 SUPERFAMILY Nucleic acid-binding proteins 186 308 IPR012340 -
Gso3g0455 517 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 80 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0455 Gso-Chr3 8012673 8019998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0455 3 306 Core DNA Replication Machinery Family AT5G45400 21.212 5.22e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0455 - - gsj:114401925 699.893