Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0443 ATGATATTTATTCTTTTTCTGATGAGTATCATAGTTTATATACTGTTTTCCCCTTCTCTCATAGTTTTCATAGCAGCAGAAACTTCATCCATTACACTATCCCAGTCCCTCAGTTACGGAAAAACCCTAGTTTCCCCAAGTGGAATCTTTGAACTCGGTTTCTGCAATCTTGGAAATCCGAACAAAATCTACCTTGGGATTTGGTACAAGAATATTCCACTTCAAAACATAGTTTGGGTTGCAAACGGTGGCAACCCAATCAAGGATTCTTTTTCCATCTTGAAACTAGACAGTTCTGGCAATTTGGTCCTTACACACAACAACACGGTTGTTTGGAGCACAAGTTCTCCAGAAAAGGCACAGAATCCGGTGGCAGAGCTCTTGGATTCAGGCAATCTTGTGATAAGAGATGAGAATGAAGCCAAGGAAGATACATATCTGTGGCAAAGCTTTGATTACCCATCTAATACAATGCTGTCAGGAATGAAGGTTGGATGGGACATCAAGAGAAATCTTAGTACTTGCCTGATAGCTTGGAAGAGTGATAATGATCCAACCCAAGGAGACTTATCATGGGGTATTACCCTGCACCCCTATCCTGATATCTATATGATGAAGGGAACAAAAAAGTACCATAGATTTGGACCATGGAATGGTTTACGTTTCAGTGGCATGCCACTTATGAAGCCTAATAACCCCATATACCATTACGAGTTTGTCTCCAACCAAGAAGTGGTTTATTACAGATGGAGTGTCAAACAGACTAGTTCAATATCTAAAGTGGTACTTAACCAAACCACACTAGAACGTCAGCGTTATGTATGGTCAGGAAAATCATGGATTTTATATGAAGTGATGCCAGAAGACAACTGTGACCATTATGGAGTCTGTGGAGCCAATACATATTGCACCACTTCTGCGTTACCAATATGTCAATGTTTAAAAGGGTTCAAGCCTAAGACTCCTGAGAAATGGAACTCAATGGACTGGTCTGAAGGATGTATCAGGAAACATCCACTTAGCTGCCAAGATAAGCTCAATGATGGGTTTGTACTTGTGGATGGCTTGAAAGTGCCGGATACTAAAGATACGTTTGTGAATGAGACTATTGATCTAAAACAATGCAGAACCAAGTGCTTGAATAATTGTTCCTGCATGGCATATACCAATTCAAATATAAGTGGGGCAGGCAGTGGCTGTGTTATGTGGTTCGGTGATTTATATGACATCAAACTGTATCCAGTTCCAGAGAATGGGCAGAGTCTATATATAAGGTTGCCTGCGTCAGAAATAGAGTCTATCAGGCACAAGAAGTCAAAAATAATATTTATAACCTCCGTTGCTGCAACTTTAGGAGTGGTGCTTGCTATTTATTTCGTCTACAAAAGGAACATTGCTGATAAGCCAAAGAAAAATGAGAACATTGAAAGACAGCTTGAAGATCTGGATGTGCCATTGTTTCATCTGCTAACAATCACTACTGCCACGAATAATTTCTCGTTGAATAATAAGATTGGACAAGGTGGTTTTGGACCTGTATATAAGGGAAAATTAGTGGATGGGCGAGAAATTGCTGTCAAGAGACTTTCAAGTAGCTCTGGACAAGGAATAACCGAGTTCACAACAGAAGTAAAACTGATTGCAAAGCTTCAACACCGAAATCTTGTAAGGCTCCTTGGTTGTTGCTTTCGAGGACAAGAAAAATTACTAGTATATGAATACATGGTTAATGGCAGCCTAGACACCTTCATTTTTGATAAAGTAAAAAGTAAATTGCTGGATTGGCCACAGCGCTTCCACATAATATTTGGAATTGCTAGAGGGCTTTTGTATCTCCATCAAGATTCCCAATTAAGGATTATTCATAGAGATCTCAAAGCAAGTAATGTTTTACTTGATGCAAAGTTAAATCCAAAAATATCAGATTTTGGAATGGCTAGAGCGTTTGGAGGAGACCAAATTGAAGGAAACACAAACAGGGTAGTTGGGACTTATGGATACATGGCCCCAGAATATGCTGTTGATGGACTATTTTCAATCAAATCGGACGTTTTCAGCTTTGGTATTTTATTGTTGGAGATTATATGTGGGAACAAAAATAGAGCTCTTTGTCATAGAAACCAGACCCTTAACCTGGTTGGTTATGCATGGACACTTTGGAAAGAGAAAAATGCTTTACAGTTGATTGACTCAAGCATAAAGGACCTATGTGCTATCCCAGAAGCACTGCGATGCATCCATGTTAGTCTCTTGTGCTTGCAACAATACCCGGAGGATAGGCCAACCATGACCTCAGTAATTCAAATGTTAGGGAGTGAGATGGAACTGGTTGAGCCAAAAGAGCCTGGCTTCTTTCCCAGAAGGATTTCGGACGAAGAAAAATTCAGCTCAAATCTAAACCATAAGACTTCAAATGATGAGTTAACCATTACCTCATTAACTGGTCGGTGA 2451 0.3974 MIFILFLMSIIVYILFSPSLIVFIAAETSSITLSQSLSYGKTLVSPSGIFELGFCNLGNPNKIYLGIWYKNIPLQNIVWVANGGNPIKDSFSILKLDSSGNLVLTHNNTVVWSTSSPEKAQNPVAELLDSGNLVIRDENEAKEDTYLWQSFDYPSNTMLSGMKVGWDIKRNLSTCLIAWKSDNDPTQGDLSWGITLHPYPDIYMMKGTKKYHRFGPWNGLRFSGMPLMKPNNPIYHYEFVSNQEVVYYRWSVKQTSSISKVVLNQTTLERQRYVWSGKSWILYEVMPEDNCDHYGVCGANTYCTTSALPICQCLKGFKPKTPEKWNSMDWSEGCIRKHPLSCQDKLNDGFVLVDGLKVPDTKDTFVNETIDLKQCRTKCLNNCSCMAYTNSNISGAGSGCVMWFGDLYDIKLYPVPENGQSLYIRLPASEIESIRHKKSKIIFITSVAATLGVVLAIYFVYKRNIADKPKKNENIERQLEDLDVPLFHLLTITTATNNFSLNNKIGQGGFGPVYKGKLVDGREIAVKRLSSSSGQGITEFTTEVKLIAKLQHRNLVRLLGCCFRGQEKLLVYEYMVNGSLDTFIFDKVKSKLLDWPQRFHIIFGIARGLLYLHQDSQLRIIHRDLKASNVLLDAKLNPKISDFGMARAFGGDQIEGNTNRVVGTYGYMAPEYAVDGLFSIKSDVFSFGILLLEIICGNKNRALCHRNQTLNLVGYAWTLWKEKNALQLIDSSIKDLCAIPEALRCIHVSLLCLQQYPEDRPTMTSVIQMLGSEMELVEPKEPGFFPRRISDEEKFSSNLNHKTSNDELTITSLTGR* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0443 816 Pfam Protein tyrosine and serine/threonine kinase 500 770 IPR001245 GO:0004672|GO:0006468
Gso3g0443 816 SUPERFAMILY Protein kinase-like (PK-like) 479 770 IPR011009 -
Gso3g0443 816 SMART ntp_6 345 426 IPR003609 -
Gso3g0443 816 Gene3D - 21 151 IPR036426 -
Gso3g0443 816 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 37 815 - -
Gso3g0443 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Gso3g0443 816 Pfam PAN-like domain 344 410 IPR003609 -
Gso3g0443 816 Coils Coil 816 816 - -
Gso3g0443 816 PIRSF SRK 1 816 IPR024171 GO:0004674
Gso3g0443 816 Gene3D Transferase(Phosphotransferase) domain 1 575 780 - -
Gso3g0443 816 Pfam S-locus glycoprotein domain 213 320 IPR000858 GO:0048544
Gso3g0443 816 SMART serkin_6 499 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0443 816 SMART blect_4 34 154 IPR001480 -
Gso3g0443 816 ProSiteProfiles Bulb-type lectin domain profile. 28 148 IPR001480 -
Gso3g0443 816 CDD B_lectin 34 154 IPR001480 -
Gso3g0443 816 ProSiteProfiles Protein kinase domain profile. 499 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0443 816 Gene3D Phosphorylase Kinase; domain 1 460 574 - -
Gso3g0443 816 CDD PAN_AP_plant 338 427 - -
Gso3g0443 816 ProSiteProfiles PAN/Apple domain profile. 342 427 IPR003609 -
Gso3g0443 816 Pfam D-mannose binding lectin 77 180 IPR001480 -
Gso3g0443 816 CDD STKc_IRAK 505 770 - -
Gso3g0443 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 185 IPR036426 -
Gso3g0443 816 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 37 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0443 Gso-Chr3 7722732 7728854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0443 442 787 Receptor kinase-like Gene Family AT4G23190 51.714 4.65e-119 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso3g0443 PK_Tyr_Ser-Thr 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0443 - - gmx:100808227 1660.2