Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0442 ATGAAAATTGTGCTATTCTCAGCACTGCTGATGCCATTTTATTGGTTGTGCCTTTCAGGAGAAACTTCATCCATCACACAATCCCAGTCCCTCAGTTACGGAAAGACCCTAGTTTCCCCAAGTGGAATCTTCGAACTCGGTTTCTTCAATCTTGGAAATCCGAACAAAATCTACCTTGGGATTTGGTACAAGAATATTCCACTTCAGAACATGGTTTGGGTTGCAAACAGTAGCATCCCAATAAAGGATTCTTCTCCAATTTTGAAGCTAGACAGTTCTGGCAATTTGGTCCTTACACACAACAACACTATTGTTTGGAGCACAAGTTCTCCAGAAAGGGTGTGGAATCCGGTGGCAGAGCTCTTGGATTCTGGCAATCTTGTGATAAGAGATGAGAATGGAGCAAAGGAAGATGCATATCTGTGGCAAAGTTTTGATTACCCTTCTAATACTATGCTGCCAGGAATGAAGATTGGATGGGACCTCAAAAGAAATCTTAGTACTTGCCTGGTAGCTTGGAAGAGTGATGATGATCCAACCCAAGGAGACTTATCTTTAGGCATTACCCTGCACCCTTATCCTGAGGTCTATATGATGAATGGAACAAAAAAGTACCATAGACTTGGACCATGGAATGGCTTGCGTTTCAGTGGCATGCCACTTATGAAGCCTAATAACCCCATTTACCATTACGAGTTTGTCTCCAACCAGGAAGAGGTTTATTACAGATGGAGCCTAAAGCAGACTGGTTCAATATCAAAAGTGGTACTTAACCAAGCCACACTAGAACGTCGTCTTTATGTATGGTCAGGGAAATCATGGATTTTATATTCAACGATGCCACAAGACAACTGTGACCATTATGGATTTTGTGGAGCCAATACATATTGCACCACTTCTGTATTACCAATGTGTCAATGTTTAAATGGGTTCAAGCCTAAGTCTCCTGAGGAATGGAACTCAATGGACTGGTCTGAAGGATGTGTCCAGAAACATCCACTTAGCTGCCGAGATAAGCTCAGTGATGGGTTTGTACCTGTGGATGGCTTGAAAGTGCCGGATACTAAAGATACATTTGTGGATGAGACCATTGATCTAAAACAATGCAGAACCAAGTGCTTGAATAATTGTTCCTGCATGGCATATACCAATTCAAATATAAGTGGAGCAGGCAGTGGCTGTGTTATGTGGTTTGGTGATTTATTTGACATCAAACTGTATCCAGTTCCAGAGAATGGGCAGAGTCTATATATAAGGTTGCCTGCGTCAGAATTAGAGTCTATCAGGCACAAGAGGAACTCTAAAATAATAATTGTAACCTCCGTTGCTGCAACTTTAGTAGTGACGCTTGCTATTTATTTCGTCTGCAGAAGGAAATTTGCCGATAAGTCAAAGACAAAAGAGAACATTGAAAGTCACATAGATGACATGGATGTGCCATTGTTTGATCTGCTAACTATCATTACTGCCACCAACAATTTTTCGTTGAATAATAAGATTGGACAAGGTGGTTTTGGACCTGTATATAAGGGAGAATTAGTGGATAGGCGACAAATTGCTGTCAAGAGACTATCAACTAGCTCTGGACAAGGAATAAATGAGTTCACAACAGAAGTAAAACTGATTGCAAAGCTTCAACACCGAAATCTTGTAAAGCTCCTTGGCTGTTGCTTTCAAGAACAAGAAAAATTACTAATATATGAATACATGGTTAATGGCAGCCTAGACACCTTCATTTTTGATCAAGTGAAAGGTAAATTACTGGATTGGCCCCGGCGCTTCCACGTAATATTTGGAATTGCTAGAGGACTTTTGTATCTCCATCAAGATTCCCGATTAAGGATTATTCATAGAGATCTCAAAGCAAGTAATGTTTTACTTGATGAAAATTTAAATCCAAAAATATCAGATTTTGGAACGGCAAGAGCTTTTGGAGGAGACCAAACTGAAGGAAACACAAAAAGAGTAGTTGGGACTTATGGATACATGGCCCCAGAATATGCTGTTGCTGGACTATTTTCAATCAAATCGGACGTTTTCAGCTTTGGCATTTTATTGTTGGAGATTGTATGTGGGATAAAAAATAAAGCTCTTTGTGATGGAAACCAGACTAATAGCCTTGTTGGTTATGCATGGACACTTTGGAAAGAGAAAAATGCTTTACAGTTGATTGACTCAAGCATAAAGGACTCGTGTGTTATCCCAGAAGTACTGCGATGCATCCATGTTAGTCTCTTGTGCTTGCAACAATACCCTGGGGATAGACCAACCATGACATCAGTAATTCAAATGTTAGGGAGTGAGATGGAACTGGTTGAGCCAAAAGAGCTTGGTTTCTTTCAAAGCAGGACTTTGGATGAAGGAAAATTAAGCTTTAATCTAGACCTAATGACTTCAAATGATGAGTTAACCATTACCTCATTAAATGGCCGGTGA 2436 0.4011 MKIVLFSALLMPFYWLCLSGETSSITQSQSLSYGKTLVSPSGIFELGFFNLGNPNKIYLGIWYKNIPLQNMVWVANSSIPIKDSSPILKLDSSGNLVLTHNNTIVWSTSSPERVWNPVAELLDSGNLVIRDENGAKEDAYLWQSFDYPSNTMLPGMKIGWDLKRNLSTCLVAWKSDDDPTQGDLSLGITLHPYPEVYMMNGTKKYHRLGPWNGLRFSGMPLMKPNNPIYHYEFVSNQEEVYYRWSLKQTGSISKVVLNQATLERRLYVWSGKSWILYSTMPQDNCDHYGFCGANTYCTTSVLPMCQCLNGFKPKSPEEWNSMDWSEGCVQKHPLSCRDKLSDGFVPVDGLKVPDTKDTFVDETIDLKQCRTKCLNNCSCMAYTNSNISGAGSGCVMWFGDLFDIKLYPVPENGQSLYIRLPASELESIRHKRNSKIIIVTSVAATLVVTLAIYFVCRRKFADKSKTKENIESHIDDMDVPLFDLLTIITATNNFSLNNKIGQGGFGPVYKGELVDRRQIAVKRLSTSSGQGINEFTTEVKLIAKLQHRNLVKLLGCCFQEQEKLLIYEYMVNGSLDTFIFDQVKGKLLDWPRRFHVIFGIARGLLYLHQDSRLRIIHRDLKASNVLLDENLNPKISDFGTARAFGGDQTEGNTKRVVGTYGYMAPEYAVAGLFSIKSDVFSFGILLLEIVCGIKNKALCDGNQTNSLVGYAWTLWKEKNALQLIDSSIKDSCVIPEVLRCIHVSLLCLQQYPGDRPTMTSVIQMLGSEMELVEPKELGFFQSRTLDEGKLSFNLDLMTSNDELTITSLNGR* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0442 811 Pfam Protein tyrosine and serine/threonine kinase 495 765 IPR001245 GO:0004672|GO:0006468
Gso3g0442 811 SMART blect_4 28 148 IPR001480 -
Gso3g0442 811 Pfam PAN-like domain 338 404 IPR003609 -
Gso3g0442 811 SMART ntp_6 339 420 IPR003609 -
Gso3g0442 811 Gene3D - 18 145 IPR036426 -
Gso3g0442 811 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 810 - -
Gso3g0442 811 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 32 810 - -
Gso3g0442 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Gso3g0442 811 SUPERFAMILY Protein kinase-like (PK-like) 470 765 IPR011009 -
Gso3g0442 811 Pfam D-mannose binding lectin 71 174 IPR001480 -
Gso3g0442 811 Gene3D Phosphorylase Kinase; domain 1 455 569 - -
Gso3g0442 811 ProSiteProfiles Bulb-type lectin domain profile. 22 142 IPR001480 -
Gso3g0442 811 Pfam S-locus glycoprotein domain 207 315 IPR000858 GO:0048544
Gso3g0442 811 CDD PAN_AP_plant 332 421 - -
Gso3g0442 811 ProSiteProfiles Protein kinase domain profile. 494 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0442 811 SMART serkin_6 494 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0442 811 CDD STKc_IRAK 500 765 - -
Gso3g0442 811 CDD B_lectin 28 148 IPR001480 -
Gso3g0442 811 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 179 IPR036426 -
Gso3g0442 811 Gene3D Transferase(Phosphotransferase) domain 1 570 776 - -
Gso3g0442 811 ProSiteProfiles PAN/Apple domain profile. 336 421 IPR003609 -
Gso3g0442 811 PIRSF SRK 1 811 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0442 Gso-Chr3 7660372 7665203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0442 414 811 Receptor kinase-like Gene Family AT3G45860 48.411 4.14e-119 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso3g0442 PK_Tyr_Ser-Thr 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0442 - - gmx:100807167 1605.5