Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0438 ATGTCTTCTGCCTACAGTTTCGACTCTGATCTCCATGATGAGGAGATGGAGATGGAGATGGACTTTCTGCGTGAACGGTATCAGGAGGACAACAGAAACTATGATGTGTTTTTAAGTTTCAGAGGGGAAGACACGCGTGCTTCTTTCACTTCACATCTCTATACCGCTCTTCACAACGCGGGAGTCTTTGTTTTCAAGGATGATGAGACACTTTCAAGGGGAAATAAAATTTCACCCTCGCTGCAGTTAGCAATTGAAGAGTCTCGAGTTTCTGTTGTTGTTTTCTCTAGAAATTATGCAGAGTCGCGGTGGTGTTTGAAAGAGTTGGAGAAAATAATGGAGTGTCACAGAACAACAGGGCAAGTGGTAGTGCCAGTGTTCTATGATGTAGATCCCTCTGAAGTACGTCATCAAACAGGCCACTTTGGAAAAGCATTTCGAAACCTTGAGAACAGACTTTTAAAAGTGGAAGAGGAAGAGCTGCAACGATGGTGGAAGACGCTTGCTGAGGCCGCTGGCATCTCAGGGCTTTCTGTTGTCCGAAATTGCAATCGTAGAAGGGAGATTGGTGATAAGATATGTCTCCTTGCGCAGCATTGGAGGGAGGCACTTCGTGAGGCTGCTGGCATCTTGGGGGATTCAGTCTCAGAATTCGGAAAAATGGACATTGCTAATAAAATAGACTACTTTGTGGAGCGTTGGAGGGACGGACTTTGTGTTGCCACTCGCATCCCGTGGAGAGGAATGTTGATTGCTGAAAAGTTAATAGATCTCCTTGTGAAGCATTGGAGGGAAACACTGTGTGAGGCACTTTGTGAGGCTGTTGGTTTCTCAGATGGTGCAGACTTATATTACAGTAGAGAAATTGAGATGGTTTATAAAATAGAACCGCTTGTGGTGAATTGGAGTACGGCACTTGGCGAGGCTGCAGGTAGCATCTCGGGGGGTGCACACCTAAATTCCCAAGGGAAGTTTGCTAATGAGATAAGCCTCCTCATGAAGCATTGGAGGGAGGCACTTTGTGAGCATAATGGCATCCCATTGGTTTTCCTCTTAAATTTCAGTGTTGAAGAGGAGATTATAAGAGATTTTAAGGACTTAATGATGTCTTGGAAGGAAGCACTTCGTGAGGCTGCTGGCATCTCGAGGGTTGTAGTCCTAAATTACAGGGGAAAAGTGAAGATTGCTACTGAAGAGAGAAACATCCTCGTGAAACATTGGGCAGAGACACTTCGTGAGGCTGCTAGCATCTCAGGGATTGTAGTCCTAAATTCCAGGAATGAAAGTGAGGCTATCAAAACTATTGTTGAAAACATTACGCGTTTGTTAAACAAGACAGAGTTGTTCGTTGCTGATAATCCAGTCGGCATAGAACCACGAGTCCAGGAAATGATTGAACTATTAGACCAAAAACAATCAAATGATGTTCTAATACTCGGGATGTGGGGGATGGGAGGCATTGGTAAAACGACTATTGCAAAAGCCATTTACAATAAGATTGGCCGCAATTTTGAGGGAAAAAGCTTCCTCGCACATATTAGGGAAGTTTGGGAGCAAGATGCTGGTCAAGTATATCTACAAGAACAACTTCTATTTGATATCAAAAAAGAAACAAACACAAAGATACGTAATGTTGAATCAGGAAAAGTTATGTTAAAAGAACGACTTCGCCATAAAAGGGTACTTCTTATACTTGATGATGTAAATAAATTGCATCAATTGAATGTTTTGTGTGGAAGTCGTGAATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACTAGAGATATGCATATACTTAGAGGGAGAAGAGTTGACAAAGTGTTCAGAATGAAAGGAATGGATGAAGATGAATCTATTGAGCTTTTTAGTTGGCATGCATTTAAGCAAGCAAGTCCAAGAGAAGATTTTATTGAACTTTCTAGAAATTTAGTTGCTTATTCTGCGGGATTGCCACTAGCTCTTGAAGTCCTTGGGTCCTATTTGTTTGATATGGAGGTAATAGAGTGGAAGAATGTATTGGAGAAACTCAAGAAAATTCCTAATGATGAAGTACAAGAGAAATTAAAAATAAGCTATGATGGTTTAACTGATGATACAGAGAAAGGAATATTCCTTGATATAGCTTGTTTCTTTATAGGAATGGACCGGAATGATGTTATACATATCTTAAATGGTTGTGGGCTTTGTGCAGAAAATGGAATACGTGTCTTGGTAGAAAGAAGCCTTGTAACTGTAGATTATAAGAACAAGCTTGGAATGCATGATTTGCTGCGAGACATGGGAAGAGAAATCATTCGTTCAAAAACACCAATGGAGCTTGAGGAGCGTAGTAGGTTATGGTTTCATGAAGATGCGCTTGATGTATTATCAAAAGAAACTGGAACAAAAGCTATTGAGGGACTGGCTTTGAAGTTACCAAGAAATAATACAAAATGTTTGAGCACTAAAGCTTTTAAGGAGATGAAAAAACTCAGGTTGCTTCAACTTGCTGGTGTACAACTGGTTGGAGATTTCAAGTATCTTTCCAAAGATCTTAGATGGCTTTGTTGGCATGGATTTCCTTTAGCATGCATACCAACAAACCTTTATCAAGGAAGTCTAGTTTCTATTGAGCTAGAAAACAGCAATGTTAATCTTTTGTGGAAAGAAGCCCAGGTAATGGAGAAGCTGAAAATTCTTAATCTCAGTCATTCTCATTATTTAACACAGACTCCAGACTTTTCAAATTTGCCTAATCTTGAAAAGCTATTACTCATAGATTGTCCAAGGTTGTCCGAGATTTCCTATACCATTGGACATCTCAATAAAGTTCTTCTAATAAATTTTCAAGATTGTATTAGCCTTCGTAAGCTTCCAAGAAGTATCTATAAGTTGAAATCTCTTAAAGCACTCATTCTTTCAGGATGTTTAAAGATTGACAAGTTAGAAGAGGATTTGGAACAAATGGAGTCTTTGACAACCCTTATTGCGGATAAGACTGCAATAACAAGAGTGCCATTTTCAATAGTTAGATCAAAAAGAATTGGATATATCTCTTTGTGCGGCTATGAAGGATTCTCACGTGATGTGTTTCCTTCAATCATTTGGTCTTGGATGTCACCAACAAATAGTCTCTCATCCCGCGTTCAAACATTTCTAGATGTGTCATCTCTCGTTTCTTTAGACGTGCCAAATAGTAGTTCCAATCATCTATCATATATTTCTAAGGACCTTCCACTGCTTCAAAGTCTTTGTATAGAGTGTGGCTCAGAACTTCAACTTTCTATAGATGCTGCAAATATTTTGGATGCTTTATATGCCACAAATTTTGAAGAATTGGAATCAACTGCAGCCACATCGCAAATGCATAATATGAATGTTTTAACATTAATTGAATGCAACAATCAAGTACACAACTTAGGATCAAAAAATTTCAGGAGATCACTTTTAATTCAAATGGGAACGAGTTGTCAAGTCACCAATATTCTGAAACAGAGAATTTTACAGAATATGACAACTAGTGATGGTGGTGGTGGTTGTTTGCTCCCCGGTGATAGCTATCCAGATTGGTTAACCTTCAACAGCGAAGGTTCATCCCTGACTTTTGAAATCCCTCAAGTGAATGGGCGTAACTTGAAGAAAATGATGTGCCATGTCCATTATTCTTCCCCGGAAAATATAACTTCAGATGGTTTGAAAAATTTGTTGGTGATAAATCACACAAAGGCCATCATTCAACTTTATAAGAGAAATGCATTAGTCTCCTTTGAAGATGAGGAGTGGCAGGGGGTACTATCAAAAATAGAGCCTGGAAACAAAGTGCAAATTGTTGTTGTCTTCTGGAGCAAATTAACTGTTCACAAGACAACAATTTATCTCATATATGAACCAATGAATGAAAAAATAGAGCATTCCCGTGCACTAAATAAGAATGTAATGGATTCTAGTGGTGAAGAAAATGAATGTGTTGTTGGGACCATCTCTCTTCAAGTAGAATCCATATATAAGCCAACAAATGACATAATGGAGCATTGTCATGCATCAAATAAGAATGCAATTGTTTCCAGCAGTGATGAAAATGAATGTGTTGTTGGGACCATCTCTCTTCAAGTAGAATCCATATATAAGCCAACAAATGACATAATGGAGCATTGCCATGCATCAAATAAGAATGCAATTGTTTCCAGCAGTGATGAAAATGCATGTGTTGTCAGGCCGTTCTCTCCTCAAGTGGAATCCATAGATGACTTAAGATGTGTTTCAAAAAAAGGCTTGATTAAGCGCTTATTGAATAAGTTCTTATCATGCGAATACTTTTGTAATGCAAACTCAGAAAATAAGAAAAATCAAGGTTAA 4338 0.3882 MSSAYSFDSDLHDEEMEMEMDFLRERYQEDNRNYDVFLSFRGEDTRASFTSHLYTALHNAGVFVFKDDETLSRGNKISPSLQLAIEESRVSVVVFSRNYAESRWCLKELEKIMECHRTTGQVVVPVFYDVDPSEVRHQTGHFGKAFRNLENRLLKVEEEELQRWWKTLAEAAGISGLSVVRNCNRRREIGDKICLLAQHWREALREAAGILGDSVSEFGKMDIANKIDYFVERWRDGLCVATRIPWRGMLIAEKLIDLLVKHWRETLCEALCEAVGFSDGADLYYSREIEMVYKIEPLVVNWSTALGEAAGSISGGAHLNSQGKFANEISLLMKHWREALCEHNGIPLVFLLNFSVEEEIIRDFKDLMMSWKEALREAAGISRVVVLNYRGKVKIATEERNILVKHWAETLREAASISGIVVLNSRNESEAIKTIVENITRLLNKTELFVADNPVGIEPRVQEMIELLDQKQSNDVLILGMWGMGGIGKTTIAKAIYNKIGRNFEGKSFLAHIREVWEQDAGQVYLQEQLLFDIKKETNTKIRNVESGKVMLKERLRHKRVLLILDDVNKLHQLNVLCGSREWFGSGSRIIITTRDMHILRGRRVDKVFRMKGMDEDESIELFSWHAFKQASPREDFIELSRNLVAYSAGLPLALEVLGSYLFDMEVIEWKNVLEKLKKIPNDEVQEKLKISYDGLTDDTEKGIFLDIACFFIGMDRNDVIHILNGCGLCAENGIRVLVERSLVTVDYKNKLGMHDLLRDMGREIIRSKTPMELEERSRLWFHEDALDVLSKETGTKAIEGLALKLPRNNTKCLSTKAFKEMKKLRLLQLAGVQLVGDFKYLSKDLRWLCWHGFPLACIPTNLYQGSLVSIELENSNVNLLWKEAQVMEKLKILNLSHSHYLTQTPDFSNLPNLEKLLLIDCPRLSEISYTIGHLNKVLLINFQDCISLRKLPRSIYKLKSLKALILSGCLKIDKLEEDLEQMESLTTLIADKTAITRVPFSIVRSKRIGYISLCGYEGFSRDVFPSIIWSWMSPTNSLSSRVQTFLDVSSLVSLDVPNSSSNHLSYISKDLPLLQSLCIECGSELQLSIDAANILDALYATNFEELESTAATSQMHNMNVLTLIECNNQVHNLGSKNFRRSLLIQMGTSCQVTNILKQRILQNMTTSDGGGGCLLPGDSYPDWLTFNSEGSSLTFEIPQVNGRNLKKMMCHVHYSSPENITSDGLKNLLVINHTKAIIQLYKRNALVSFEDEEWQGVLSKIEPGNKVQIVVVFWSKLTVHKTTIYLIYEPMNEKIEHSRALNKNVMDSSGEENECVVGTISLQVESIYKPTNDIMEHCHASNKNAIVSSSDENECVVGTISLQVESIYKPTNDIMEHCHASNKNAIVSSSDENACVVRPFSPQVESIDDLRCVSKKGLIKRLLNKFLSCEYFCNANSENKKNQG* 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0438 1445 ProSiteProfiles TIR domain profile. 32 172 IPR000157 GO:0007165
Gso3g0438 1445 Gene3D - 388 450 IPR035897 -
Gso3g0438 1445 Coils Coil 13 33 - -
Gso3g0438 1445 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 40 1287 IPR044974 GO:0006952
Gso3g0438 1445 Pfam NB-ARC domain 460 687 IPR002182 GO:0043531
Gso3g0438 1445 SUPERFAMILY Toll/Interleukin receptor TIR domain 24 176 IPR035897 -
Gso3g0438 1445 SUPERFAMILY L domain-like 803 1132 - -
Gso3g0438 1445 Gene3D - 30 196 IPR035897 -
Gso3g0438 1445 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 40 1287 - -
Gso3g0438 1445 SUPERFAMILY "Winged helix" DNA-binding domain 683 790 IPR036390 -
Gso3g0438 1445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 442 708 IPR027417 -
Gso3g0438 1445 Gene3D - 451 607 IPR027417 -
Gso3g0438 1445 Gene3D Ribonuclease Inhibitor 797 1017 IPR032675 -
Gso3g0438 1445 Coils Coil 973 993 - -
Gso3g0438 1445 SMART till_3 33 174 IPR000157 GO:0007165
Gso3g0438 1445 Pfam TIR domain 33 181 IPR000157 GO:0007165
Gso3g0438 1445 SMART AAA_5 475 615 IPR003593 -
Gso3g0438 1445 Gene3D - 613 697 IPR042197 -
Gso3g0438 1445 CDD AAA 455 612 - -
Gso3g0438 1445 PRINTS Disease resistance protein signature 478 493 - -
Gso3g0438 1445 PRINTS Disease resistance protein signature 555 569 - -
Gso3g0438 1445 PRINTS Disease resistance protein signature 648 662 - -
Gso3g0438 1445 PRINTS Disease resistance protein signature 886 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0438 Gso-Chr3 7495990 7515072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0438 405 1003 WRKY Transcription Factor Family AT4G12020 33.496 4.69e-75 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0438 - - gmx:100800776 2855.47