Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0435 ATGGATCATCATCACACTCCTTCCACTAACCAAACCTCATCATCTCAATTCTCTTCTTCAAAACCAAACCAAATTTCAAACAAGGAGAAAAAGGGTGTCAAAAAATGCAAAGGGGTAATGAGGCTTTCCACCGACCCACAAAGCGTGGCAGCAAGAGAACGAAGGCACAGAATCAGTGACAGGTTCAAGATCCTGCAGAGCATGGTCCCTGGTGGGAGCAAGATGGATACAGTATCCATGCTTGAAGAAGCCATTCAGTATGTGAAGTTCCTCAAGACCCAGATTTGGCTCCACCAAACCATGATCAACTTCATGGACAATGATAATTACAATATTAATGATAATAATGAGTCTTCTTCTTTACTGTACCCTAATAACGATTGTTACTACTTCCCTTCTGAACATTTTGTTTCACCTCAGCAAAATGCAACGTTTGATTATAGCAACATGCAGGATTTGCAGCATCTGCAGCCACTGGCAGCACAATGCGGCTTCCAAGGTGAAGACTCGAACTATTTTGATGCCTCTTTGAAATATTGGCCAGCTTGA 549 0.4226 MDHHHTPSTNQTSSSQFSSSKPNQISNKEKKGVKKCKGVMRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKFLKTQIWLHQTMINFMDNDNYNINDNNESSSLLYPNNDCYYFPSEHFVSPQQNATFDYSNMQDLQHLQPLAAQCGFQGEDSNYFDASLKYWPA* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0435 182 MobiDBLite consensus disorder prediction 1 35 - -
Gso3g0435 182 SMART finulus 48 97 IPR011598 GO:0046983
Gso3g0435 182 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 42 91 IPR011598 GO:0046983
Gso3g0435 182 MobiDBLite consensus disorder prediction 7 26 - -
Gso3g0435 182 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 19 170 - -
Gso3g0435 182 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 170 IPR045843 GO:0003700|GO:0006355
Gso3g0435 182 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 103 IPR036638 GO:0046983
Gso3g0435 182 Gene3D - 42 100 IPR036638 GO:0046983
Gso3g0435 182 CDD bHLH_AtIND_like 43 105 - -
Gso3g0435 182 Pfam Helix-loop-helix DNA-binding domain 52 91 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0435 Gso-Chr3 7426042 7427062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0435 40 125 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 45.349 5.26e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso3g0435 HLH 4.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0435 - - gmx:113001230 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0435 3 7426042 7427062 Gso3g0435 3 7426042 7427062 ECH