Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0430 ATGGGAGAAAGCAGTGGCTCACAATGTTCCAAGACAAGTCCTTCTAACATTGATGAAGATGACGAGGGTGAAAGTGAGGCCAATGAAGATCAAAGTAAGCAAAACAACAACGGAGGAAGCTCAAGTAACAGCACAGTGGAAGAGAATGAGAAGAAGATAAGGCCTTATGTTAGATCCAAGATGCCAAGGCTTCGGTGGACACCTGATCTTCATCTTCGCTTTATTCATGCGGTTCAACGACTTGGAGGACAAGAGAGAGCAACACCAAAATTGGTTCTTCAATTGATGAACATCAAAAGTTTAAGTATTGCCCATGTCAAGAGTCATTTACAGATGTTTAGGAGCAAAAAGGTGGATGACCGAAATCAAGTATTTGCGGATCATAACAGTCTTGTTGAAACCGGAGACAAAAATATTTATAATCTTAGCCAACTTTCAATGCTCCAAGGGTATAATCCGAGTCAAAGTTCATCCTTCAGCTACACAAACAATTATCCAAGTTATGGATTCGGGGATGCTTCTTTTGGTGTCTACGAGAAACTGCTACAAAGACCTTTCGATTGGTCTAATGCAATTTCTTCTCGGGAAGGTTCATCCATTTTTGGTGAACAAAGCAAAATCCGTGAACCGAAAGATGAGTTTCTCTCATTTGGTGCTCATGATCACTCTCTAAGCACACCCACAAGATTAAGCCACGTTGATCACACGCCACCAATCAATATTATGCAACAAATAGCACAAAATCTCATGCCTATAAACCCAACAACAAATCAACCAGAATTGAAGACACTGAAAAGGAAGGCTTCAGATCATACAACCCTTGATTTGGATCTGTCACTAAAACTAAACTCAAAGATTAATGATGCTGAAGAAGGAACATTAAATAACCATGAAGTTGATAGCACAAACCTATCACTCTCATTGTGCTCTCAATTATCCTCATCATCTAATCCTAGCAGCAGGTTGATCAAGGAAGCACAACAAGATCGATGTGATGAACAAGGGAAAATAATGGCCAGTACTCTAGATCTGACTATATGA 1041 0.3987 MGESSGSQCSKTSPSNIDEDDEGESEANEDQSKQNNNGGSSSNSTVEENEKKIRPYVRSKMPRLRWTPDLHLRFIHAVQRLGGQERATPKLVLQLMNIKSLSIAHVKSHLQMFRSKKVDDRNQVFADHNSLVETGDKNIYNLSQLSMLQGYNPSQSSSFSYTNNYPSYGFGDASFGVYEKLLQRPFDWSNAISSREGSSIFGEQSKIREPKDEFLSFGAHDHSLSTPTRLSHVDHTPPINIMQQIAQNLMPINPTTNQPELKTLKRKASDHTTLDLDLSLKLNSKINDAEEGTLNNHEVDSTNLSLSLCSQLSSSSNPSSRLIKEAQQDRCDEQGKIMASTLDLTI* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0430 346 MobiDBLite consensus disorder prediction 1 56 - -
Gso3g0430 346 Gene3D - 61 118 - -
Gso3g0430 346 MobiDBLite consensus disorder prediction 30 46 - -
Gso3g0430 346 Pfam Myb-like DNA-binding domain 64 112 IPR001005 -
Gso3g0430 346 PANTHER - 232 346 - -
Gso3g0430 346 PANTHER - 4 203 - -
Gso3g0430 346 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 4 203 IPR044848 GO:0003700
Gso3g0430 346 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 232 346 IPR044848 GO:0003700
Gso3g0430 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 118 IPR017930 -
Gso3g0430 346 SUPERFAMILY Homeodomain-like 60 116 IPR009057 -
Gso3g0430 346 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 62 117 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0430 Gso-Chr3 7250144 7252367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0430 26 119 G2-like Transcription Factor Family AT2G42660 59.574 1.00e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso3g0430 Myb_DNA-binding 9.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0430 - - gmx:100801120 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0430 3 7250144 7252367 Gso3g0430 3 7250144 7252367 ECH