Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0427 ATGGCTCCAAAAAATCTCTTTGGTCTCCTCATCTTTCTCATTCTCCTTGTTACTTGCACTGCTTTTTCCTTCCAATTCCATGGCTTCCATAATAGTGAAAGAAATCTCACCCGTGAAGGGGATTCAAATGTCACACCCCAAGGTATACTTCAGCTCACCAAAAGAGAAAACAACATTGTTGGCCATGCATTTTATAACAAACCCATCAAAATATTAGAGAAAACAAATTCTTCAGTGCCCCAAACAAAATTTTCCTCCTTTAGTACATGCTTTGTTTTCTCAATTGTGTCACCAAACTCTGGCCTTGGTGGCTTTGGTCTTGCCTTCACCATAGCTCCCACAACACAATTCCCAGAGGCTGAAGGTGGCCATTTTCTTGGTCTTTTCAACAATTCCAATGATATGAACACCTCAAATCATATCTTGGTGGTTGAATTTGACACAGTGAATGGCTACAAAGATAACACTGACACTGTAGGAAACCATGTTGGGGTAAACATAAATGGCATGCAATCAAAGATAGCTGAGCCTGCAGCATACTTTGAAGAAGGCATGGATGCAAAAAAGGAAGAGTTCAGCATGGAGAAGGAAGATGCTGTTTGTGCTTGGATTGAATATGATGGTGAAACAGAAATCTTGAATGTCACAATAGCCCCTTTAAAGGTATCAAAACCAAGCAAGCCACTTATATCCCAGGCCATTCATGACATCAAGTTTGTTATGAAGGAAACCATGTTTTTTGGTTTCTCTGCATCAACAGGTAAGAGGAAAGCAAGCTCTCATTATATTCTTGGGTGGAGTGTTTCAGTGAATGGGGGAATTGCCCCTCCACTAAATTTTTCACTCCTTCCAAAGCCACCACCAAAGGAGAAAGATGCATCATCTTTTCCTTGGGTCAAGGTTGCAGTTGCCATGTTGTCTGCTTTGACATTTACCTTGTTGTGCCTGTTGTTTATTGTGACACGCTACAAGAGATACATGATATTTGAAACCCTTGAGGACTGGGAGCTTGATTGTCCTCATAGGTTCAGATATAGAGATCTTCACATAGCAACAAAGGGTTTCATAGAGAGCCAGCTAATTGGAGTTGGAGGCTTTGGTGCTGTGTACAAAGGTGTTTTACCTAGCACAGGAACTGAAGTTGCTGTCAAAAGAATCATGAGAAGTCCAATGCAAGGGATGAGGGAATTTGCAGCTGAGATTGAAAGCTTAGGAAGATTGAGGCACAAGAATTTGGTCAACCTTCAAGGGTGGTGCAAGCACAAGAATGATCTAATCCTAATTTATGACTACATTCCAAATGGTAGTCTTGACTCTCTCCTATTCAACGATAACATTGCTTTGGATTGGGATCAGAGATTCAATATCATCAAAGGTGTAGCTGCAGGGTTGTTGTATCTTCATGAAGAGTGGGAGCAAGTTGTGATCCATAGAGATGTGAAATCAAGCAATATTCTAATAGATGGCGAGTTCAATGCTCGTTTGGGTGATTTTGGACTAGCTAGGCTTTATAGCCATGATCAAGTGTCACACACAACAAGTGTTGTTGGCACCATTGGGTATATTGCACCAGAGTTAACTAGAACAGGAAAAGCCTCTGCAAGCTCTGATGTGTATGCATTTGGGGTCCTACTTCTTGAAGTGGTTGCTGGCACAAGACCTGTTGGCTCTTCAGGCCAGTTTTTGTTGGTGGATTGGGTTCTTGAGAATTGCCAACTGGGTCAGATTCTTGAAGTGGTTGATCCTAAGCTAGGTTCTGCTTATGATGAGGAGGAAATGGAGTTGGTGCTGAAATTGGGTCTCTTGTGTTCACAATACAAAGCTGAGTATAGACCTTCTATGAAACAAGTGGCTAGGTACCTAAACTTTGATGACTCTCTTCCTGATATCTCTGATTGGAGATACTATGATTCTCAAAGCAGCACAAATAGCTTAAGTTTCTTAGAAGCCATGTCTACGGGAAAGATTGCATCTTCATACAGTTTATCTTCCATTGGCAGCAGAAGTACACTGCCAATAAAAACCGGTAGATAG 2034 0.414 MAPKNLFGLLIFLILLVTCTAFSFQFHGFHNSERNLTREGDSNVTPQGILQLTKRENNIVGHAFYNKPIKILEKTNSSVPQTKFSSFSTCFVFSIVSPNSGLGGFGLAFTIAPTTQFPEAEGGHFLGLFNNSNDMNTSNHILVVEFDTVNGYKDNTDTVGNHVGVNINGMQSKIAEPAAYFEEGMDAKKEEFSMEKEDAVCAWIEYDGETEILNVTIAPLKVSKPSKPLISQAIHDIKFVMKETMFFGFSASTGKRKASSHYILGWSVSVNGGIAPPLNFSLLPKPPPKEKDASSFPWVKVAVAMLSALTFTLLCLLFIVTRYKRYMIFETLEDWELDCPHRFRYRDLHIATKGFIESQLIGVGGFGAVYKGVLPSTGTEVAVKRIMRSPMQGMREFAAEIESLGRLRHKNLVNLQGWCKHKNDLILIYDYIPNGSLDSLLFNDNIALDWDQRFNIIKGVAAGLLYLHEEWEQVVIHRDVKSSNILIDGEFNARLGDFGLARLYSHDQVSHTTSVVGTIGYIAPELTRTGKASASSDVYAFGVLLLEVVAGTRPVGSSGQFLLVDWVLENCQLGQILEVVDPKLGSAYDEEEMELVLKLGLLCSQYKAEYRPSMKQVARYLNFDDSLPDISDWRYYDSQSSTNSLSFLEAMSTGKIASSYSLSSIGSRSTLPIKTGR* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0427 677 Gene3D - 20 274 - -
Gso3g0427 677 SMART serkin_6 355 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0427 677 PANTHER - 12 660 - -
Gso3g0427 677 Gene3D Phosphorylase Kinase; domain 1 340 431 - -
Gso3g0427 677 CDD lectin_legume_LecRK_Arcelin_ConA 22 272 IPR001220 GO:0030246
Gso3g0427 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Gso3g0427 677 Gene3D Transferase(Phosphotransferase) domain 1 432 634 - -
Gso3g0427 677 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VI.1-RELATED 12 660 - -
Gso3g0427 677 Pfam Protein kinase domain 357 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0427 677 Pfam Legume lectin domain 23 281 IPR001220 GO:0030246
Gso3g0427 677 SUPERFAMILY Protein kinase-like (PK-like) 339 636 IPR011009 -
Gso3g0427 677 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
Gso3g0427 677 CDD STKc_IRAK 361 622 - -
Gso3g0427 677 ProSiteProfiles Protein kinase domain profile. 355 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0427 677 SUPERFAMILY Concanavalin A-like lectins/glucanases 20 288 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0427 Gso-Chr3 7194589 7196833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0427 24 641 Receptor kinase-like Gene Family AT5G01560 50.715 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso3g0427 Pkinase 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0427 - - gmx:100792854 1334.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0427 3 7194589 7196833 Gso3g0427 3 7194589 7196833 ECH
Gso18g1654 18 48480280 48482478 Gso3g0427 3 7194589 7196833 PCT
Gso3g0427 3 7194589 7196833 Gso18g1654 18 48480280 48482478 PCT