LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g0412	ATGACACTTTCTTCGTTTTTGTATATTGTTTTCATATTTCATTTCTTCTTCACATCCCCCTCACTCTCTTTGTCTTCCGATGGGCTCGCGCTTCTCGCGCTAAAGTCCGCCGTGGACGAGCCCTCCGCCGCAGCTTTCTCCGACTGGAACAACGGCGACCCCACGCCTTGTGCCTGGTCGGGGATCGCCTGCGCCAATGTCTCCGGCGAGGGGGAGCCGCGAGTTGTCGGAATTTCCCTCGCCGGAAAATCGCTCTCTGGCTACCTCCCCTCGGAGCTCGGCACGCTGCGGTTCCTCCGGCGACTCAACCTCCACGACAACGCCTTCTCTGGCGTCCTCCCGGCGCAGCTCTCCAACGCCACCGCGCTCCACAGCCTCTTCCTTCACGGAAACAACCTCTCCGGCGCAATCCCCTCCTCCCTCTGCACCCTCCCCCGCCTCCAGAACCTTGACCTCTCCGAAAACGCCTTCTCCGGCCACATCCCGGAGCACCTCAGAAACTGCAAGAACCTCCAGCGCCTCGTCCTCGCCGGCAACAAATTCTCCGGCGAGATTCCGGCCGGCGTGTGGCCGGACCTGCAAAACCTCCTCCAACTCGACCTCTCCGATAACGAGTTTACAGGCTCAATCCCCAGCGAAATCGGAACCCTAATTTCCCTCTCCGGCACGCTGAACCTCTCCTTCAACCACCTCTCCGGTAAAATTCCGTCTTCGTTGGGAAAATTACCGGCAACAGTGATCTTTGACCTCAAAAACAATAACCTCAGCGGCGAGATTCCCCAGACGGGGTCGTTTTCCAACCAGGGCCCCACCGCGTTCCTCGGAAACCCAGACGTATGTGGGTTTCCACTCAGGAAATCGTGTTCTGGTTCGGACCGAAATTTTTCTTCCGGTTCGGACCAGAACAAACCGGACAACGGTAACCGGTCCAAGGGGCTGAGTCCGGGGCTAATTATTTTAATCTCGGCAGCTGATGCTGCTGTGGTGGCCTTGATTGGTCTTGTGATTGTTTACATTTATTGGAAGAGAAAGGATGATGAGAATGCTTGTAGTTGCATTAGGAAGAGGAGTTTTGGTGAAGAGAAAGGGAACATGTGTGTGTGTGGTGGGTTATCATGTTTTGGTGGGGTGAAGAGTGATGATGATGATGAAGAGTTTGAAGGTGGTGAGGGTGAAGGGGAATTAGTGAGGATTGATAAGGGTTTGAGTTTTGAGCTTGATGAGTTGTTGAGGGCTTCAGCTTATGTGTTGGGGAAGAGTGGATTGGGGATTGTGTATAAGGTGGTGTTGGGGAATGGGGTTCCTGTGGCTGTGAGGAGGTTGGGGGAGGGTGGGGAACAGAGGTATAAGGAGTTTGCTGCTGAGGTTATGGCCATTGGGAAGGTCAAGCACCCTAATGTTGTGAGGTTGAGGGCTTACTATTGGGCACATGATGAGAAGCTTCTCATCAGTGATTTCATCTCCAATGGCAATTTGGCTCATGCCCTTAGAGGGAGAAATGGCCAACCATCTACAAATCTTTCATGGTCCACCAGGCTGAGAATCGCCAAAGGAACAGCGAGGGGCCTGGCCTATCTCCACGAATGCAGTCCAAGAAAATTCGTCCATGGCGACATCAAGCCCTCCAACATCCTGCTAGACAACGACTTTCAACCCTACATATCCGATTTTGGCCTCAACCGTCTAATCAGCATCACCGGCAACAACCCCTCCACCGGTGGATTCATGGGTGGAGCTCTTCCTTACATGAACTCATCACAGAATGAGAGAACCAACAATTACAAAGCCCCCGAGGCTCGAGTCCCTGGCTGCAGAACCACCCAGAAATGGGATGTGTATTCGTTTGGAGTTGTCCTGCTTGAAATACTAACTGGGAGGTCACCAGAGTCATCTCCCACCACATCAACTTCCATGGAAGTCCCTGACTTGGTAAGGTGGGTTAGAAAAGGATTCGATCAAGAAAGCCCATTATCCGAAATGGTTGATCCATCTCTGCTCCAAGAAGTGCGCGTCAAGAAAGAGGTTCTGGCTGTGTTTCATGTTGCACTGTCTTGCACTGAGGAAGATCCAGAGGCTCGGCCTAGGATGAAAACTGTCTGCGAAAATCTTGATAAGATTGGAACGTAA	2127	0.5256	MTLSSFLYIVFIFHFFFTSPSLSLSSDGLALLALKSAVDEPSAAAFSDWNNGDPTPCAWSGIACANVSGEGEPRVVGISLAGKSLSGYLPSELGTLRFLRRLNLHDNAFSGVLPAQLSNATALHSLFLHGNNLSGAIPSSLCTLPRLQNLDLSENAFSGHIPEHLRNCKNLQRLVLAGNKFSGEIPAGVWPDLQNLLQLDLSDNEFTGSIPSEIGTLISLSGTLNLSFNHLSGKIPSSLGKLPATVIFDLKNNNLSGEIPQTGSFSNQGPTAFLGNPDVCGFPLRKSCSGSDRNFSSGSDQNKPDNGNRSKGLSPGLIILISAADAAVVALIGLVIVYIYWKRKDDENACSCIRKRSFGEEKGNMCVCGGLSCFGGVKSDDDDEEFEGGEGEGELVRIDKGLSFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVMAIGKVKHPNVVRLRAYYWAHDEKLLISDFISNGNLAHALRGRNGQPSTNLSWSTRLRIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNDFQPYISDFGLNRLISITGNNPSTGGFMGGALPYMNSSQNERTNNYKAPEARVPGCRTTQKWDVYSFGVVLLEILTGRSPESSPTTSTSMEVPDLVRWVRKGFDQESPLSEMVDPSLLQEVRVKKEVLAVFHVALSCTEEDPEARPRMKTVCENLDKIGT*	709

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g0412	708	Gene3D	Transferase(Phosphotransferase) domain 1	487	708	-	-
	Gso3g0412	708	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	7	708	-	-
	Gso3g0412	708	Pfam	Protein kinase domain	416	701	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso3g0412	708	Gene3D	Ribonuclease Inhibitor	190	290	IPR032675	-
	Gso3g0412	708	SUPERFAMILY	Protein kinase-like (PK-like)	416	703	IPR011009	-
	Gso3g0412	708	SMART	serkin_6	415	706	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso3g0412	708	Gene3D	Phosphorylase Kinase; domain 1	403	486	-	-
	Gso3g0412	708	ProSiteProfiles	Protein kinase domain profile.	411	706	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso3g0412	708	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	534	546	IPR008271	GO:0004672\|GO:0006468
	Gso3g0412	708	Pfam	Leucine rich repeat	145	205	IPR001611	GO:0005515
	Gso3g0412	708	CDD	STKc_IRAK	417	706	-	-
	Gso3g0412	708	PANTHER	RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1	7	708	-	-
	Gso3g0412	708	SUPERFAMILY	L domain-like	25	285	-	-
	Gso3g0412	708	Gene3D	Ribonuclease Inhibitor	24	189	IPR032675	-
	Gso3g0412	708	SMART	LRR_typ_2	193	217	IPR003591	-
	Gso3g0412	708	SMART	LRR_typ_2	96	119	IPR003591	-
	Gso3g0412	708	SMART	LRR_typ_2	144	168	IPR003591	-
	Gso3g0412	708	Pfam	Leucine rich repeat N-terminal domain	25	64	IPR013210	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g0412	Gso-Chr3	6890831	6896663	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g0412	18	706	Receptor kinase-like Gene Family	AT1G67510	67.324	0.0	944

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Gso3g0412		Pkinase	2.8e-33	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g0412	-		-	gmx:100787556	1306.2