LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g0411	ATGGAGCTCAAACTCCACACATCAATGACTTCCATTCCACGTGCAATCTTCACCCATTCCTCTTCCTCCATTCCTTTTTGTACCTATGCGGTTCTCGATGCTAGCAGATTGATTGGGATGTACTGTAAATGTGGTAGTGTGAAGAATGCATGCCGAGTGTTTGATCAAATGTTGGACAAAAACATTGCTTCATGGCATTTGATGCTTGGTGGGTACACGAGTAATGGTTTAAGGTGTGGTGGTTTATTGGTTTTCCAGCAGATGAAGCAATCAGGGGTGTCATCTGATGGGGAAACTTTTGAGTTGGTTTTGACTGCATTTGTCATTGAATTTCATACATTCTATTTTTTTGATAGGAATGATGTTGAGCTACTTCAAGAAATCATCAATCTTGTGCTGATGACGTTGAGAAATCATACAGTAGATTCAAAAGGGCTGGTTGGCATTGACAAACAAGTTGCACATTTAGAATCTTTGTTAAAACAAGAGTCAAAAGATGTCTGTGTTATCGGAATTTGGGGTGTGGGCGGTATTGGTAAGACAACCATTGCACAGGAAGTGTTTAGCAAATTATATCTGGAATATGAAAGTTGTTGTTTTTTTGCAAATGTAAAGGAAGAAATAAGAAGACTTGGAGTAATTTCTTTAAAAGAAAAACTATTTGCTTCAATATTACACAAATATGTGAATATTAAAACACAAAAAGGATTGTCCAGTTCTATTAAGAAAATGATTGGCCAAAAGAAGGTGCTTATTGTTCTTGATGATGTGAATGATTCAGAGCAGCTGGAAGAATTATTTGGAACTCCAGACTGGTATGGGTTAGGTAGTAGAATTATTATAACAACTAGAGATATAAAAGTTCTTATAGCCAACAAAGTTCCTGAAATATACCATGTTGGTGGATTGAGTTCCTGTGAAGCATTTCAGCTTTTTAAGTTGAATGCCTTTAACCAAGGTGATCTTGAAATGGAGTTTTACGAGCTATCAAAGAGGGTGGTTGATTATGCCAAGGGCATTCCATTAGTTCTTAAAATATTGGCTCATCTTCTTTGTGGAAAAGATAAGGAGGTATGGAAAAGTCAACTAGAAAAGCTTAAAGGAATCAAGAGTAACAATGTTCATGATTTTGTGAAACTTAGTTTTGACGATCTACACCATGAAGAACAAGAGATTCTTTTAGATCTTGCATATTGTGGAAGTCATAATGCAGTGGTTGTTGGGTTAGAAAGGCTGAAAGAAAAATCTCTTATAACTATTTCTGAAGATAATGTTGTATCTATGCATGATACTATACAAGAAATGGCATGGGAGATTGTTTGCCAAGAATCTAATGACCTTGGAAATCGCAGTCGATTATGGGATCCTATTGAGATCTATGATGTTTCGAAAAATGACAAGGGGACTAAGGCAATTAGAAGCATAACAACACCTTTGTCAACATTGAAGAATCTGAAGTTACGTCCTGATGCATTTGTTAGGATGAGCAATCTACAATTTTTGGATTTTGGTAATAATTCTCCTTCTCTTCCACAAGGGCTTCAATCTTTGCCAAATGAGTTAAGATATCTTCATTGGATGCATTACCCTTTGACATGCTTGCCAGAGCAATTTTCTGCTGAGAAGCTTGTTATATTAGACTTGTCATGTAGCAGAGTGGAAAAATTATGGCATGAAGTGAAAAATCTGGTGAATTTAAAGAATGTTAAATTCCGTTGGTGTGTATTGCTGAATGAGCTTCCAGACTTCTCAAAATCCACAAATCTCAAGGTACTGGATGTTAGTTGTTCCAGTGGGTTGACTAGTGTGCATCCATCTATTTTCTCTCTACACAAGCTTGAGAAATTGGACCTTAGTGGATGCAGTTCCCTCATCAAATTTTCAAGTGATGATGGTCATTTAAGCTCCCTACTTTATCTCAACCTCAGTGACTGTGAAGAACTAAGGGAATTCTCAGTGACAGCCGAGAATGTGGTTGAACTAGATTTAACCGGCATTCTCATCAGTTCATTGCCCTTGTCTTTTGGAAGTCTACGAAAGTTAGAAATGCTACATCTAATACGTAGTGACATTGAAAGCTTGCCAACATGCATCAATAATCTTACAAGACTGCGATATCTTGACTTGAGTTGTTGCAGCAATCTCTGCATTCTACCGAAGCTTCCCCCATCCCTTGAAACTCTACATGCTGATGAGTGTGAATCACTGGAGACTGTATTGTTCCCTTCCACGGCAGTTGAACAATTTGAGGAAAACAGGAAACGAGTTGAGTTTTGGAATTGCTTAAAGTTGGATGAATTTTCTCTGATGGCTATTGAGTTAAATGCGCAAATCAATGTAATGAAATTTGCATACCAACATTTATCAGCACCAATACTTGATCATGTGGAAAATTACAATGATTACAAGGATCTCCATGATTCTTATCAAGCAGTGTACATGTATCCAGGAAGCAATGTTCCAGAGTGGTTGGCATATAAGACTAGAAAGGATTATGTAATTATTGATCTCTCTTCTGCTCCACCTGCTCATTTGGGTTTCATTTTCTGCTTCATTCTGGACAAGGACACGGAGGAGTTTTTGGATCCTGCATTGCAATTTAGCATCTCTATCAGTAATGGTGAGAATGAATGTAAAAGGGACAGTGTTGAAATACAAACTTCTGGGCCATATTCTATGATTTATTCGGACCATGTTTGTGTGTTGTATGACAAACGATGTTCTTGCTACCTGAACAACAGACTTAAAAGTCTGGCAAAGTTTAAAATCAAAGTATCATGGCTTACAGATGGTGAACGGTGGGAGGCGTTAAAAGGGTTTGGGGTCAGCCCAATAAACACCTCAGTATATCACAATTTTGTTCAACAAATGGAACTGTGCGACCAAGGTTTTAGGCCGGTGTTGAAGCGAACTCCAAAGAAAAGGAAAAGGGTGATCAGAGAACATGATAACCTCTAG	2958	0.3776	MELKLHTSMTSIPRAIFTHSSSSIPFCTYAVLDASRLIGMYCKCGSVKNACRVFDQMLDKNIASWHLMLGGYTSNGLRCGGLLVFQQMKQSGVSSDGETFELVLTAFVIEFHTFYFFDRNDVELLQEIINLVLMTLRNHTVDSKGLVGIDKQVAHLESLLKQESKDVCVIGIWGVGGIGKTTIAQEVFSKLYLEYESCCFFANVKEEIRRLGVISLKEKLFASILHKYVNIKTQKGLSSSIKKMIGQKKVLIVLDDVNDSEQLEELFGTPDWYGLGSRIIITTRDIKVLIANKVPEIYHVGGLSSCEAFQLFKLNAFNQGDLEMEFYELSKRVVDYAKGIPLVLKILAHLLCGKDKEVWKSQLEKLKGIKSNNVHDFVKLSFDDLHHEEQEILLDLAYCGSHNAVVVGLERLKEKSLITISEDNVVSMHDTIQEMAWEIVCQESNDLGNRSRLWDPIEIYDVSKNDKGTKAIRSITTPLSTLKNLKLRPDAFVRMSNLQFLDFGNNSPSLPQGLQSLPNELRYLHWMHYPLTCLPEQFSAEKLVILDLSCSRVEKLWHEVKNLVNLKNVKFRWCVLLNELPDFSKSTNLKVLDVSCSSGLTSVHPSIFSLHKLEKLDLSGCSSLIKFSSDDGHLSSLLYLNLSDCEELREFSVTAENVVELDLTGILISSLPLSFGSLRKLEMLHLIRSDIESLPTCINNLTRLRYLDLSCCSNLCILPKLPPSLETLHADECESLETVLFPSTAVEQFEENRKRVEFWNCLKLDEFSLMAIELNAQINVMKFAYQHLSAPILDHVENYNDYKDLHDSYQAVYMYPGSNVPEWLAYKTRKDYVIIDLSSAPPAHLGFIFCFILDKDTEEFLDPALQFSISISNGENECKRDSVEIQTSGPYSMIYSDHVCVLYDKRCSCYLNNRLKSLAKFKIKVSWLTDGERWEALKGFGVSPINTSVYHNFVQQMELCDQGFRPVLKRTPKKRKRVIREHDNL*	986

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g0411	985	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	86	962	IPR044974	GO:0006952
	Gso3g0411	985	Coils	Coil	982	985	-	-
	Gso3g0411	985	Gene3D	-	302	386	IPR042197	-
	Gso3g0411	985	Gene3D	Tetratricopeptide repeat domain	27	114	IPR011990	GO:0005515
	Gso3g0411	985	TIGRFAM	PPR: pentatricopeptide repeat domain	37	62	IPR002885	-
	Gso3g0411	985	SUPERFAMILY	"Winged helix" DNA-binding domain	373	461	IPR036390	-
	Gso3g0411	985	Pfam	NB-ARC domain	157	367	IPR002182	GO:0043531
	Gso3g0411	985	Gene3D	-	133	295	IPR027417	-
	Gso3g0411	985	Gene3D	Ribonuclease Inhibitor	656	782	IPR032675	-
	Gso3g0411	985	Gene3D	Ribonuclease Inhibitor	456	655	IPR032675	-
	Gso3g0411	985	SUPERFAMILY	L domain-like	479	761	-	-
	Gso3g0411	985	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	61	95	IPR002885	-
	Gso3g0411	985	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	86	962	-	-
	Gso3g0411	985	PRINTS	Disease resistance protein signature	169	184	-	-
	Gso3g0411	985	PRINTS	Disease resistance protein signature	244	258	-	-
	Gso3g0411	985	PRINTS	Disease resistance protein signature	337	351	-	-
	Gso3g0411	985	PRINTS	Disease resistance protein signature	608	624	-	-
	Gso3g0411	985	Pfam	PPR repeat	37	62	IPR002885	-
	Gso3g0411	985	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	139	396	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g0411	Gso-Chr3	6847816	6853684	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g0411	108	719	WRKY Transcription Factor Family	AT4G12020	34.923	3.75e-82	290

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g0411	-		-	gmx:100781152	1829.68