Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0406 ATGGCATATTCTTCTTCCGGAGCTTCTCAAATAAAATATGTTGTTCTTCTTCTTTGTGATCTCATGCTTATCTCGGGATTGACGGGTGAAATATCAGATAATAGTCCTCAAATAAAGTATGATGTTTTTGTTAGCTTCAGGGGGGAGGACATCCGTCACGGTTTTCTTGGTTATTTGACTGAGGCTTTTCATCAAAAGCAGATACATGCCTTCATAGATGATAAACTTGAGAAGGGAGATGAAATATGGCCATCACTTGTTGGAGCAATTCAAGGATCATTGATTTCCTTGACCATATTCTCTGGAAACTACTCCTCTTCGCGTTGGTGTCTAGAAGAACTTGTGAAAATAATTGAGTGCAGGGAGACATATGGACAAACTGTGATACCTGTTTTCTACCATGTAAATCCCACAGATGTACGACATCAAAAGGGGAGTTATGAAAAAGCTCTTGCTGAACATGAAAAGAAATATAATTTGACAACAGTGCAAAACTGGAGACATGCTTTGAAGAAAGCTGCTGATTTATCAGGAATAAAGTCTTTTGATTACAAGAATGAAGTTGAGCTGCTTGGAGAAATCATCAACACGGTCAATCTTAAGTTAATGAGGTTGGATAAGAATCCACTTAGCTTAAAAGGACTTGTTGGAATTGACAGATCAATTCAATATGTAGAGTCAATGCTACAACATGAGTCAAGCAACGTCCGTGTTATTGGAATTTGGGGTATGGGTGGTATTGGAAAGACAACCATTGCACAAGAAATTTTAAACAAACTTTGTTCTGGATATGACAGTTATTGTGTTTTTGTAAATGTAAAGGAAGAAATAAGAAGACATGGAATAATTACCTTGAAGGAAATTTTTTTTTCTACACTACTACAAGAAAATGTGAAAATGATCACAGCAAATGGATTGCCAAATTATATCAAGAAAAAGATTGGTGGCATGAAGGTTTTAATTGTTCTAGATGATGTAAATGATTCAGATCTACTAGAAAAATTGTTCGGAAACCATGATTGGTTTGGACCAGGTAGTAGAATCATTTTAACAACTAGAGACAAGCAAGTGCTTATTGCTAATAAAGTGCATGTTGATGATATATACCAAGTTGGGGTATTGAACCCTAGTGAAGCACTTGAACTTTTCATCTTACATGCCTTTAACCAAAAGCTTTTTGATATGGAGTATTATAAATTATCAAAGAGAGTGGTGTGTTATGCCCAAGGTATTCCATTAGTTCTTAAAGTTTTGGGTGGTCTTCTTTGTGGAAAAGATAAAGAAGTGTGGGAAAGTCAGCTAGACAAACTCAAAAACATGCCGAACACAGATGTTTACAATGCAATGAGATTGAGTTATGATGATCTAGATCGCAAAGAACAAAAGATTTTCTTAGATCTTGCATGTTTCTTCATAGGATTGGATGTGAAAGTGGACCTCATAAAAGTTTTATTGAAAGATAATGAAAGAGATAATTCAGTGGTTGTTGGATTAGAAAGGTTGAAAGATAAATCTCTCATAACCATTTCTAAATATAATATTGTGTATATGCATGATATCATACAAGAAATGGGTTGGGAGATTGTTCGCCAAGAATCTATTGAAGACCCTGGCAGTCGCAGCCGATTATGGGATGCCGATGACATTTATGAAGTATTAAAAAATAATAAGGGAACTGAGTCCATAAGAAGCATAAGAGCAGACTTGTCAGTAATTAGGGAGCTGAAGTTAAGCCCTGACACATTTACTAAGATGAGTAAACTACAATTTTTGCATTTTCCTCATCAAGGTTGCGTTGATCATTTTCCTCACAGACTTCAATCTTTTTCAGTTGAGCTAAGGTATATTGTTTGGAGGCATTTCCCTCTAAAATCCTTGCCAGAGAACTTTTCTGCCAAAAACCTTGTTCTCTTGGACTTGTCATATAGCCGGGTGGAAAAACTTTGGGATGGAATACAGAATTTGAAGAATTTAAAAGAAGTTAAAGTCTCTGGTTCTAAAAACTTGAAGGAGCTTCCAAACCTTTCAGAAGCCACAAATCTTGAAGTATTGGATATCAGTGCTTGTCCTCAGTTGGCTAGTGTGATTCCTTCCATTTTCTCTCTCACCAAGCTCAAGATAATGAAGCTAAATTATCGCTCCTTTACCCAAATGATAATCGATAACCATACAAGCTCCATTAGTTTTTTCACCCTTCAAGGGTCTACAAAACATAAATTAATTTCACTGAGATCAGAGAATATCACTGTTGGACCTTTTGGATGCATTTGTTACAAAGAAAAACCCTCGTCTTTTGTATGTCAAAGCAAGCTCGAAATGTTTAGGATAACCGAAAGTGACATGGGGTACTTGCCTTCAAGCTTCATGAATCTTAGAAGACAGCGATATCTGAGAGTTCTAGATCCGAGGGAGCTTCTCATGATAGAAAGTGGCTCTGTAGATGTCATAGATTGCAAATCATTGAAGCACGTATTGGTTCTTGCTGAACAATTCAAGTATATCAGCAGTGGCGTTGGCATTCAGAATTACCAAGGATTGGTCGAAGAATCGGTGGTGGTGGCATTAGATGCAATTTCATCAACTGTTGAAACTGTGGTTGACCATTCAGAGCTTATAGATGACAAGAGGTATATTAGTATTGATGAAAGAAAATTGAAGCCAGTGAAGAGAATTGATGAATATTTAATGAAGTACCACATGAATATATTTCTGGATTTGGCCAATAGAGATGAATTAATTGTTACAAACAGGAAGCCTGTACACGCCCATTGTCGTGCAATTGACAATGATGATTCTGTAACAAATTAA 2808 0.3636 MAYSSSGASQIKYVVLLLCDLMLISGLTGEISDNSPQIKYDVFVSFRGEDIRHGFLGYLTEAFHQKQIHAFIDDKLEKGDEIWPSLVGAIQGSLISLTIFSGNYSSSRWCLEELVKIIECRETYGQTVIPVFYHVNPTDVRHQKGSYEKALAEHEKKYNLTTVQNWRHALKKAADLSGIKSFDYKNEVELLGEIINTVNLKLMRLDKNPLSLKGLVGIDRSIQYVESMLQHESSNVRVIGIWGMGGIGKTTIAQEILNKLCSGYDSYCVFVNVKEEIRRHGIITLKEIFFSTLLQENVKMITANGLPNYIKKKIGGMKVLIVLDDVNDSDLLEKLFGNHDWFGPGSRIILTTRDKQVLIANKVHVDDIYQVGVLNPSEALELFILHAFNQKLFDMEYYKLSKRVVCYAQGIPLVLKVLGGLLCGKDKEVWESQLDKLKNMPNTDVYNAMRLSYDDLDRKEQKIFLDLACFFIGLDVKVDLIKVLLKDNERDNSVVVGLERLKDKSLITISKYNIVYMHDIIQEMGWEIVRQESIEDPGSRSRLWDADDIYEVLKNNKGTESIRSIRADLSVIRELKLSPDTFTKMSKLQFLHFPHQGCVDHFPHRLQSFSVELRYIVWRHFPLKSLPENFSAKNLVLLDLSYSRVEKLWDGIQNLKNLKEVKVSGSKNLKELPNLSEATNLEVLDISACPQLASVIPSIFSLTKLKIMKLNYRSFTQMIIDNHTSSISFFTLQGSTKHKLISLRSENITVGPFGCICYKEKPSSFVCQSKLEMFRITESDMGYLPSSFMNLRRQRYLRVLDPRELLMIESGSVDVIDCKSLKHVLVLAEQFKYISSGVGIQNYQGLVEESVVVALDAISSTVETVVDHSELIDDKRYISIDERKLKPVKRIDEYLMKYHMNIFLDLANRDELIVTNRKPVHAHCRAIDNDDSVTN* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0406 935 SUPERFAMILY L domain-like 517 835 - -
Gso3g0406 935 SUPERFAMILY Toll/Interleukin receptor TIR domain 35 178 IPR035897 -
Gso3g0406 935 ProSiteProfiles TIR domain profile. 38 202 IPR000157 GO:0007165
Gso3g0406 935 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 37 859 IPR044974 GO:0006952
Gso3g0406 935 SMART till_3 39 176 IPR000157 GO:0007165
Gso3g0406 935 Gene3D Ribonuclease Inhibitor 547 848 IPR032675 -
Gso3g0406 935 Gene3D - 204 367 IPR027417 -
Gso3g0406 935 Gene3D - 37 203 IPR035897 -
Gso3g0406 935 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 37 859 - -
Gso3g0406 935 PRINTS Disease resistance protein signature 238 253 - -
Gso3g0406 935 PRINTS Disease resistance protein signature 313 327 - -
Gso3g0406 935 PRINTS Disease resistance protein signature 408 422 - -
Gso3g0406 935 PRINTS Disease resistance protein signature 676 692 - -
Gso3g0406 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 467 IPR027417 -
Gso3g0406 935 Pfam NB-ARC domain 224 443 IPR002182 GO:0043531
Gso3g0406 935 Pfam TIR domain 39 216 IPR000157 GO:0007165
Gso3g0406 935 Gene3D - 373 457 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0406 Gso-Chr3 6787623 6810417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0406 40 689 WRKY Transcription Factor Family AT4G12020 33.233 2.21e-86 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0406 - - gsj:114406074 1831.61