Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0405 ATGGCAAACTCTTCTTCCGGAGCTTCGGCAATAAAATATGTTCTTTTTCAATGTTTCTTTATTATTTCCGGACTGATGGATGTGGCCTCCAAGCAAATGCCAGATTATGTTCCTCAAATAAAATATGATGTGTTTGTGAACTTTAGGGGCGACGACATCCGTCGAGATTTTCTTGGTCATTTGACTAAGGAACTTCGTCGAAAGCAAATTCATGCCTTTGTAGATGATAAACTTAAGACTGGAGACGAACTATGGCCATCATTTGTTGAAGCAATTCAAGGATCATTGATTTCGTTGACCATATTATCTGAAAACTATGCTTCTTCATCCTGGAGTTTGAATGAACTTGTGACAATACTTGAGTGCAGGGAGAAATACAATCGAATAGTGATACCTGTTTTCTACAAGGTATATCCTACAGATGTACGACATCAAAATGGGAGTTATAAAAGTGATTTTGCTGAACATGAAAAGAAATATAATTTGGCCACAGTGCAAAACTGGAGACATGCTTTGAGCAAGGCTGCTAATTTATCTGGAATAAAGTCATTCAATTATAAGACTGAAGTTGAGCTGCTTGAAAAAATCACCGAATCTGTTAATCTTGAGTTAAGGAGGTTGCGTAACCATCCACATAACTTAAAAGGGGTTATAGGAATGGAAAAGCCAATTCAAAGTTTGGAATCATTGATACGTCAAAAGTCAATAAATGTCAATGTTATTGGAATTTGGGGTATGGGTGGTATCGGAAAGACCACCATTGCAGAAGCAATGTTTAACAAGCTATATTCTGAATATAATGCTTCTTGCTTTTTGGCAAACATGAAGGAAGAATATGGAAGACGTGGAATAATTTCTTTAAGGGAAAAACTTTTTTCTACACTGCTAGTTGAAAATGAGAAAATGAATGAGGCAAATGGATTGTCTGAATATATTGTGAGAAGGATTGCTGGTATGAAGGTTTTAATTGTTCTTGATGATGTGAACCACTCGGATCTACTAGAAGAATTATTTGGAGACCATCATTGGTTTGGAGCAGGCAGTACAATCATTATAACAAGTAGAGACAAACAAGTGCTCATAGCTAATAAGGTTGATGATATATACGAAGTTGGGGCCTTGAACTCGAGTCAAGCACTAGAGCTTTTTAGTTTGTATGCCTTTAAAAAAAATCATTTTGATATGGAGTATGATGAGCTATCAAAGAGGGTGGTCAATTATGCCAATGGCATTCCATTAGTTCTTAAAGTTTTGGGTCGTCTCCTTTGTGGAAAAGATAAGGAAGTATGGGAAAGTCAGCTAGACAAACTTAAAAGCATGCCAAATAAACATGTTTACAATGCAATGAAATTGAGTTATGATGATCTAGATCGCAAAGAAAAAAATATTTTTTTAGATCTTTCATGTTTCTTCATAGGACTGAATTTGAAAGTGGACCACATAAAACTTTTATTGAAAGATAGTGAAAGTGATAATTCAGTGGTTGCTGGGTTAGAAAGGCTGAAGGATAAAGCTCTTATAACCATCTCTGAAAATAATGTTGTATCTATGCACAATGTTATACAAGAAATGGCATGGGAGATTGTTCGTGGTGAATCTATTGAACACGCTGAAAGTCGTAGCCGATTGATAGATCCAGTTGATATTTGTGATGTACTAGAAAATAACAAGGGGACTGAGGCTATAAGAAGCATAAGGGCTGATTTGTCAGTATTTCTGAAGCTGAAGTTTAGCCCTCACATATTTACTAAGATGAGCAAACTACAATTTTTGAGTTTTACAAACAAACATGATGAAGATGATATTGAGTTTCTTCCTAACGGACTTCAATCTTTCCCAGATGAGCTAAGATATCTCCATTGGAGGTATTACCCTCTGAAATCCTTGCCAGAGAATTTTTCTGCTGAAAAACTTGTTATACTGGACATGTCAAATAGCCAATTGGAAAAACTTTGGGATGGAGTGCAGAATTTGGTGAATTTAAGAGAAGTAAAAGTCTGTGATTCTAAAAACTTGAAGGAGCTGCCAGACCTTACACAAGCTACAAATCTTGAAGAATTGGATATCAGTGCTTGTCCTCAGTTGACTAGTGTGAATCCGTCTATTTTCTCTCTCAACAAGCTCCAGAGATTGAATATAGGTTACTGTTATATTACCAAAGTTGTAAGCAATAACCATTTAAGCTCCCTTAGATATCTCAGCCTTGGAAGTTGCCCTAATCTAGAGGAATTTTCAGTGACATCAGAGAATATGATTGAGCTAGATCTATCGTATACTCGTGTCAATGCATTGCCATCATCTTTTGGACGTCAAAGCAAGCTCAAACTCCTAAGACTTGGCTCCACTGACATCAAGAAATTGCCTTCAAGCTTCAAGAATCTTACTGCACTGCAATATCTGAGTGTAGAATTGTCCAGGCAGCTTCACACTCTAACGGAGCTTCCCCCATCTCTTGAAACTCTTGATGCCACAGGTTGCGTATCATTGAAGACTGTACTGTTTCCATCAATTGCTCAACAATTCAAGGAAAATAGGAGAGATGTTCGCTTTTGGAATTGCTTGAATTTGGATGAACATTCTCGCAAGGCTATTGGGTTAAATGCACGTATTAATGCGATGAAATCTGCGCACCAACATTTATCTGCACCGGATCAAAATTACAACAATTACAGTCGTAAGTACAGATTTTATCAGGTGAAGTATGTGTATCCCGGCCGAAAAATTCCCGAATGGTTCGAGTATCAGACAAGAGATGATTATATAATGATCGATCTCCCTTCTACTCCACGATCATCTCAATTGGGCTTCATTTTCAGCTTCGTTATATCTTACCCTCTGCACAGAACAGTAGGTTATTTTTCAAGATTTACATTTCATATCATTATCAGTGATGATGGGGGGTATAAAAGTGAAAAGAGTAGTATCAACATCTACATGTCTGCCCTTCATCTCAGGCCAAATTCGAAACATGTGTGTGTCATTTATGACCAACGATGTTCTCGCTACCTGAACAGTAGAGCTGAAAATAAGAGGAGGCTTAAGATTGAGGTTGAAGTAATGGGAGACACACATCCTGAATGGGGTGCGGAGTTGGAAGCATTCGGGGTCAGTGTAATAAATACCTCAGCATATCACAATTTCGTTCAACAGATAAACACTTCATCAGGTCATAATTTCATTCAACATATAGGAATGTCTGATCCTATGCATTCATTATGCTTGAAATCATCTTGCGCATATCCCTCTTGTGGTTTAGATGAAGACTTTGATTAA 3273 0.3727 MANSSSGASAIKYVLFQCFFIISGLMDVASKQMPDYVPQIKYDVFVNFRGDDIRRDFLGHLTKELRRKQIHAFVDDKLKTGDELWPSFVEAIQGSLISLTILSENYASSSWSLNELVTILECREKYNRIVIPVFYKVYPTDVRHQNGSYKSDFAEHEKKYNLATVQNWRHALSKAANLSGIKSFNYKTEVELLEKITESVNLELRRLRNHPHNLKGVIGMEKPIQSLESLIRQKSINVNVIGIWGMGGIGKTTIAEAMFNKLYSEYNASCFLANMKEEYGRRGIISLREKLFSTLLVENEKMNEANGLSEYIVRRIAGMKVLIVLDDVNHSDLLEELFGDHHWFGAGSTIIITSRDKQVLIANKVDDIYEVGALNSSQALELFSLYAFKKNHFDMEYDELSKRVVNYANGIPLVLKVLGRLLCGKDKEVWESQLDKLKSMPNKHVYNAMKLSYDDLDRKEKNIFLDLSCFFIGLNLKVDHIKLLLKDSESDNSVVAGLERLKDKALITISENNVVSMHNVIQEMAWEIVRGESIEHAESRSRLIDPVDICDVLENNKGTEAIRSIRADLSVFLKLKFSPHIFTKMSKLQFLSFTNKHDEDDIEFLPNGLQSFPDELRYLHWRYYPLKSLPENFSAEKLVILDMSNSQLEKLWDGVQNLVNLREVKVCDSKNLKELPDLTQATNLEELDISACPQLTSVNPSIFSLNKLQRLNIGYCYITKVVSNNHLSSLRYLSLGSCPNLEEFSVTSENMIELDLSYTRVNALPSSFGRQSKLKLLRLGSTDIKKLPSSFKNLTALQYLSVELSRQLHTLTELPPSLETLDATGCVSLKTVLFPSIAQQFKENRRDVRFWNCLNLDEHSRKAIGLNARINAMKSAHQHLSAPDQNYNNYSRKYRFYQVKYVYPGRKIPEWFEYQTRDDYIMIDLPSTPRSSQLGFIFSFVISYPLHRTVGYFSRFTFHIIISDDGGYKSEKSSINIYMSALHLRPNSKHVCVIYDQRCSRYLNSRAENKRRLKIEVEVMGDTHPEWGAELEAFGVSVINTSAYHNFVQQINTSSGHNFIQHIGMSDPMHSLCLKSSCAYPSCGLDEDFD* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0405 1090 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 39 887 IPR044974 GO:0006952
Gso3g0405 1090 Pfam Leucine Rich Repeat 637 656 IPR011713 -
Gso3g0405 1090 Gene3D - 373 457 IPR042197 -
Gso3g0405 1090 Gene3D Ribonuclease Inhibitor 747 901 IPR032675 -
Gso3g0405 1090 Gene3D - 207 367 IPR027417 -
Gso3g0405 1090 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 39 887 - -
Gso3g0405 1090 SUPERFAMILY L domain-like 567 830 - -
Gso3g0405 1090 SMART till_3 41 178 IPR000157 GO:0007165
Gso3g0405 1090 SUPERFAMILY "Winged helix" DNA-binding domain 444 553 IPR036390 -
Gso3g0405 1090 Gene3D - 39 206 IPR035897 -
Gso3g0405 1090 Gene3D Ribonuclease Inhibitor 568 746 IPR032675 -
Gso3g0405 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 467 IPR027417 -
Gso3g0405 1090 Pfam NB-ARC domain 228 454 IPR002182 GO:0043531
Gso3g0405 1090 PRINTS Disease resistance protein signature 240 255 - -
Gso3g0405 1090 PRINTS Disease resistance protein signature 315 329 - -
Gso3g0405 1090 PRINTS Disease resistance protein signature 408 422 - -
Gso3g0405 1090 PRINTS Disease resistance protein signature 725 741 - -
Gso3g0405 1090 ProSiteProfiles TIR domain profile. 40 204 IPR000157 GO:0007165
Gso3g0405 1090 SUPERFAMILY Toll/Interleukin receptor TIR domain 38 180 IPR035897 -
Gso3g0405 1090 Pfam C-JID domain 903 980 IPR045344 -
Gso3g0405 1090 Pfam TIR domain 41 200 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0405 Gso-Chr3 6766567 6780457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0405 28 842 WRKY Transcription Factor Family AT4G12020 32.053 6.57e-98 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0405 - - gmx:100779013 2149.78