Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0403 ATGTCTTCTTTCCCATTACGCTTTCCGCCTGAACGGTATCAAGAGGACAACAGAAACTATGACGTGTTTTTGAGTTTCAGAGGGGAAGACACGCGTGCTTCTTTCACTTCACATCTCTATACCGCTCTTCACAACGCGGGAATCTCTGTTTTCAAGGATGATGAGACACTTCCAAGGGGAAATAAAATTTCAACCTCGCTGGGGTTAGCAATTGAAGAGTCTCGACTTTATGTTGTTGTTTTCTCTAGAAACTATGCAAATTCGCTATGGTGTTTGCAAGAGTTGGAGAAAATAATGGAGTGTCACAAAGCAACAGGACAAGTGGTAGTGCCAGTGTTCTATGATGTAGATCCCTCTGAAGTACGTCATCAAACAGGCCACTTTGGACAAGCATTTCGAAACCTTGAGGCGTATATCGATTTAAAAATGGAAGAGGAAATGCTGCCAGGATGGCGCAAGATGGTTTGTGAGGGCCCTCGCATCTCCGGGCCTTCTGTTTTCCGAGATTGCAATGGTCAAAGTGAGATTTTGGAAAGGATACATCGCCACGTGGAGCATTGGAGGGTGTCACTTCGTGAGGCTGTTAGCATCTCCCCCGGTTCAGGATTCGGAAAAATGGACGTCGTTGCTAATAAAATAGACAACTTTGTGGAGCGTTGGAGGGACGGACTTTGTGTTGCCACTCGCATCCCGTGGAGAGGAATGTTGATTGCTGAAAAGTTAATAGATCTCCTTGTGAAGCATTGGAGGATAACACTGGGCAGGGTAATTTTTATGGCTGCTGGTAAGCCAGATGATTCAGCCTTGAAGCATTGGAGTGAGGCACTTTGGGAGGCTGCTCGCATCTCGGGAGGTGCAGACCTAATTTCCAAAAGAAAGGAAATGAATCCTCTTGTTGCCTATGAGATAGACCTCCTCGTGAAGGATTGGAGGAAGGCACATCGTGCGGTTGGTGGCATCTCAGCGGGTGTAGTCTTAAAATCCATTGCTGAAGAGGAGATCAGAAAAGATTTTGAGGTTCTTGTAATTCATTGGAAGGAAGCACTTCATGAGGCTGCTGACATCTTGAGGAATGAAAGTGAGGCTATCAAAACTATTGTTGAAAACGTTACGCCTTTGTTAGACAAGACAGAGTTGTTTGTTGCTGATAATCCAGTCGGCGTAGAACCACGAGTCCAGGAAATGATTGAACTATTAGACCAAAAACAATCAAACGGTGTTCTACTACTCGGGTTGTGGGGGATGGGAGGCATTGGTAAAACAACTATTGCAAAAGCCATTTACAACAAGATTGGCCGCAATTTTGAGGTAAAAAGCTTCCTCGCACGTATTAGGGAAGTTTGGGGGCAAGATGCTGGTCAAGTATATCTACAAGAACAACTTCTATTTGATATCGGAAAAGAAACAAACACAAAGATACGTAATGTTGACTCAGGAAAAGTTATGTTAAAAGAACGACTTCGCAATAAAAGGGTACTCCTTATACTTGATGATGTAAATAATTTGCATCAATTGAATGTTTTGTGTGGAAGTCGTGAATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACTAGAGATATGCATATACTTAGAGGGACAAGAGTTGACAAAGTGTTCAGAATGAAAGGAATGGATGAAGATGAATCTATTGAGCTTTTTAGTTGGCATGCATTTAAGCAAGCAAGTCCAAGAGAAGATTTTATTGAACTTTCTAGAAATGTAATTGCTTATTCTGCGGGATTGCCACTAGCTCTTGAAGTCCTTGGGAAGTATTTGTTTGATATGGAGGTAACAGAGTGGAAAAATGTATTGGAGACACTCAAGAAAATTCCTAATGATGAAGTACAAGAGAAATTAAAAATAAGCTATGATGGTTTAACTGGTGATACAGAGAAAGGAATATTTCTTGATATAGCTTGTTTCTTTACAGGAAAGGACCGGAATGATGTTATACATATCTTAAATGGTTGTGGGCTTTGTGCAGAAAATGGAATACGTGTCTTGGTAGAAAGAGGCCTTGTAACTGTAGATTATAAGAACAAGCTTGGAATGCATGATTTGCTGCGAGACATGGGAAGAGAAATCATTCGTTCAAAAACACCAATGGAGCCTGAGGAGCGTAGTAGGTTATGGTTTCATGAAGATGCGCTTGATGTATTATCAAAAGAAACTGGAACAAAAGCTATTGAGGGACTGGCTTTGAAGTTACCAAGAACTAATACAAAATGTTTGAGCACTAAAGCTTTTAAGGAGATGAAAAAACTCAGGTTGCTTCAACTTGCTGGTGTACAATTGGTTGGAGATTTCAAGTATCTTTCCAAAGATCTTAGATGGCTTTGTTGGCATGGATTTCCTTTAGCATGCATACCAACAAACCTTTATCAAGGAAGTCTAGTTTCCATTGAGCTAGAAAACAGCAATGTTAATCTTTTGTGGAAAGAAGCCCAGGTAATGGAGAAGCTGAAAAATCTTAATCTCAGTCATTCTCATTATTTAACAGAGACTCCAGACTTTTCAAATTTGCCTAATCTTGAAAAGCTATTACTCGTGGATTGTCCAAGGTTGTCAGCGGTTTCCTATACCATTGGACATCTCAATAAAGTTCTTCTAATAAATTTTCAAGATTGTATTAGCCTTCTTAACCTTCCAAGAAGTATCTATAAGTTGAAATCTCTTAAAGCACTCATTCTTTCAGGATGTTTAAAGATTGACAAGTTAGAAGAGGATTTGGAACAAATGGAGTCTTTGACAACCCTTATTGCGGATAAGACTGCAATAACAAGAGTGCCATTTTCAATAGTTAGATCAAAAAGAATTGGATATATCTCTTTGTGCGGTTATGAAGGATTCTCACGTGATGTGTTTCCTTCAATCATTTGGTCTTGGATGTCACCAACAAATATTCTCTCATCCCGCGTTCAAACATTTCTAGATGTGTCATCTCTCGTTTCATTAGACGTGCCAAATAGTAGTTCCAATCATCTATCATATATTTCCAAGGACCTTCCACTGCTTCAAAGTCTTTGTATAGAGTGTGGCTCAGAACTTCAACTTTCTCTAGATGCTGCAAATATTTTGGATGCTTTATATGCCACAAATTTTGAAGAATTGGAATCAACTGCAGTCACATCGCAAATGCATAATATGAATGTTTTAACATCAATTGAATGCAACAATCAAGTACACAACAAAGGATCAAAAAATTTCAGGAGATCACTTTTAATTCAAATGGGAACGAGTTGTCAAGTCACCAATATTCTGAAACACAGAATTTTACAGAATACGGCCACTAGTGATGGTGGTGGTTGTTTGCTCCCCGGTGATAGCTATCCAGATTGGTTAACCTTCAACAGCGAAGGTTCATCTGTGACTTTTGAAATCCCTCAAGTGAAAGGGCGTAACTTGAAGAAAATGATGTGCCATGTCCATTATTCTTCCCCGGAAAATATAACTTCAGATGGTTTGAAAAATTTGTTGGTGATAAATCACTCAAAGGCCATCATCCAACTTTATAAGAGAAATGCATTAGTCTCCTTCGAAGATGATCAGTGGCACGGGATACTATCAAAAATAGAGCCTGGAAACAAAGTGCAAATTGTTGTTGTCTTCTGGAGCAAATTAACTGTTTACAAGACAACAATTTATCTCATATATGAACCAATGAATGAAAAAATAGAGCATTCCCATGCGCCAAATAAGAACGTAATGGATTCTAGTGGTGATGAAAATGAATGTGTTGTTGGGACCATCTCTCTTCAAGTAGAATCCATATATAAGCCAACAAATGACATAATGGAGCATTGCCATGCATCAAATAAGAATGCAATTGTTTCCAGCAGTGATGAAAATGAATGTGTTGTCAGGCCATCCTCTCCTCAAGTGGAATCCATAGATGACTTAAGGTGTGTTTCAAAAAAAGGCTTGATTAAGCGCTTATTGAATAAGTTCTTATCATGCGAATACTTTTGTAATGCAAACTCAGAAAATAAGAAAAATCAAGGTTAA 4008 0.3917 MSSFPLRFPPERYQEDNRNYDVFLSFRGEDTRASFTSHLYTALHNAGISVFKDDETLPRGNKISTSLGLAIEESRLYVVVFSRNYANSLWCLQELEKIMECHKATGQVVVPVFYDVDPSEVRHQTGHFGQAFRNLEAYIDLKMEEEMLPGWRKMVCEGPRISGPSVFRDCNGQSEILERIHRHVEHWRVSLREAVSISPGSGFGKMDVVANKIDNFVERWRDGLCVATRIPWRGMLIAEKLIDLLVKHWRITLGRVIFMAAGKPDDSALKHWSEALWEAARISGGADLISKRKEMNPLVAYEIDLLVKDWRKAHRAVGGISAGVVLKSIAEEEIRKDFEVLVIHWKEALHEAADILRNESEAIKTIVENVTPLLDKTELFVADNPVGVEPRVQEMIELLDQKQSNGVLLLGLWGMGGIGKTTIAKAIYNKIGRNFEVKSFLARIREVWGQDAGQVYLQEQLLFDIGKETNTKIRNVDSGKVMLKERLRNKRVLLILDDVNNLHQLNVLCGSREWFGSGSRIIITTRDMHILRGTRVDKVFRMKGMDEDESIELFSWHAFKQASPREDFIELSRNVIAYSAGLPLALEVLGKYLFDMEVTEWKNVLETLKKIPNDEVQEKLKISYDGLTGDTEKGIFLDIACFFTGKDRNDVIHILNGCGLCAENGIRVLVERGLVTVDYKNKLGMHDLLRDMGREIIRSKTPMEPEERSRLWFHEDALDVLSKETGTKAIEGLALKLPRTNTKCLSTKAFKEMKKLRLLQLAGVQLVGDFKYLSKDLRWLCWHGFPLACIPTNLYQGSLVSIELENSNVNLLWKEAQVMEKLKNLNLSHSHYLTETPDFSNLPNLEKLLLVDCPRLSAVSYTIGHLNKVLLINFQDCISLLNLPRSIYKLKSLKALILSGCLKIDKLEEDLEQMESLTTLIADKTAITRVPFSIVRSKRIGYISLCGYEGFSRDVFPSIIWSWMSPTNILSSRVQTFLDVSSLVSLDVPNSSSNHLSYISKDLPLLQSLCIECGSELQLSLDAANILDALYATNFEELESTAVTSQMHNMNVLTSIECNNQVHNKGSKNFRRSLLIQMGTSCQVTNILKHRILQNTATSDGGGCLLPGDSYPDWLTFNSEGSSVTFEIPQVKGRNLKKMMCHVHYSSPENITSDGLKNLLVINHSKAIIQLYKRNALVSFEDDQWHGILSKIEPGNKVQIVVVFWSKLTVYKTTIYLIYEPMNEKIEHSHAPNKNVMDSSGDENECVVGTISLQVESIYKPTNDIMEHCHASNKNAIVSSSDENECVVRPSSPQVESIDDLRCVSKKGLIKRLLNKFLSCEYFCNANSENKKNQG* 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0403 1335 ProSiteProfiles TIR domain profile. 18 155 IPR000157 GO:0007165
Gso3g0403 1335 Pfam NB-ARC domain 390 617 IPR002182 GO:0043531
Gso3g0403 1335 SMART AAA_5 406 546 IPR003593 -
Gso3g0403 1335 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 153 IPR035897 -
Gso3g0403 1335 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 28 1217 - -
Gso3g0403 1335 SUPERFAMILY "Winged helix" DNA-binding domain 614 721 IPR036390 -
Gso3g0403 1335 Gene3D - 374 539 IPR027417 -
Gso3g0403 1335 Coils Coil 904 924 - -
Gso3g0403 1335 Pfam TIR domain 19 188 IPR000157 GO:0007165
Gso3g0403 1335 Gene3D - 16 193 IPR035897 -
Gso3g0403 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 639 IPR027417 -
Gso3g0403 1335 SUPERFAMILY L domain-like 734 1027 - -
Gso3g0403 1335 SMART till_3 19 161 IPR000157 GO:0007165
Gso3g0403 1335 Gene3D Ribonuclease Inhibitor 727 949 IPR032675 -
Gso3g0403 1335 Gene3D - 544 628 IPR042197 -
Gso3g0403 1335 PRINTS Disease resistance protein signature 409 424 - -
Gso3g0403 1335 PRINTS Disease resistance protein signature 486 500 - -
Gso3g0403 1335 PRINTS Disease resistance protein signature 579 593 - -
Gso3g0403 1335 PRINTS Disease resistance protein signature 888 904 - -
Gso3g0403 1335 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 1217 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0403 Gso-Chr3 6528020 6557262 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0403 345 934 WRKY Transcription Factor Family AT4G12020 33.279 2.10e-73 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0403 - - gmx:100800776 2197.55