Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0401 ATGTCTTCTGCCTCCAGTTACGACTCTGATCTCCATGATGAGGAGATGGAGATGGACTTTCTGCGTGAACGGTATGAGGAGGACAACAGAAGCTATGATGTGTTTTTAAGTTTCAGAGGGGAAGACACGCGTGCTTCTTTCACTTCACATCTCTATACCGCTCTTCACGACGCGGGAGTCTTTGTTTTCAAGGATGATGAGACACTTCCAAGGGGAAATAAAATTTCACCCTGGCTGCAGTTAGCAATCGAAGAGTCTCGAGTTTCTGTTGTTGTTTTCTCTAGAAACTATGCAGAGTCGCGGTGGTGTTTGAAAGAGTTGGAGAAAATAATGGAGTGTCATAGAACAACAGGGCATGTGGTAGTGCCAGTGTTCTATGACGTAGATCCCTCTGAAGTACGCCATCAAACAGGCCACTTTGGAACAGCATTTCGAAACCTTGAGAACAGACTTTTAAAAGTGGAAGTGGAAGGGCTGCAACGATGGTGGGAGACGCTTGCTGAGGCCGCTGGCATCTCAGGGCTTTCTGTTGTCCGATATTGCAATCTTAGAAGGGAGGTTGGTGATAAGATATGTCTCCTCGCGCAGCATTGGAGGGAGGCACTTCGTGAGGCTGCTGGCATCTTGGGGGATTCAGTCTCAGATTTGGGAGAAATGGACATTGCTAGTAAAATAGACTACTTTGTGGAGCGTTGGAGGGACGGACTTTGTGTTGCCACTCGCATCCCGTGGAGAGGAATGTTGATTGCTGAAAAGTTAATAGATCTCCTTGTGAAGCATTGGAGGGAAACACTGTGTGAGGCACTTTGTGAGGCTGTTGGTTTCTCAGATGGTGCAGACTTATATTACAGAGAAATTGAGATGGTTTATAAAATAGAACAGCTTGTGGTGAATTGGAGTACGGCACTTTGCGAGGCTGCAGGTAGCATCTCGGGGGGTGCACACCTAAATTCCAAAGGAGGGAAGTTTGCTAATGAGATAAGCCTCCTCATGAAGCATTGGAGGGAGGCACATTGTGAGCATAGTGGCATCCCATTGGCTTTCCTCTTAAATTTCAGTGTTGAAGAGGAGATCATAAGAGATTTTAAGGACTTAATGATGTCTTGGAAGGAAGCACTTCGTGAGGCTGCTGGCATCTCGAGGGTTGTAGTCCTAAATTACAGGGGAAAAGTGAAGATTGCTGCTAAAGAGATAAACATCCTCGTGAAACATTGGGCAGAGGCACTTTGTGAGGCTGCTAGCATCTCAGGGATTGTAGTCCTAAATTCCAGGAATGAAAGTGAGGCTATCAAAACCATTGTTGAAAACGTTACGCGTTTGTTAGACAAGACAGAGTTGTTCGTTGCTGATAATCCAGTCGGCGTAGAACCACGAGTCCAGGAAATGATTGAACTAATAGACCAAAAACAATCAAATGATGTTCTAGTACTCGGGATGTGGGGGATGGGAGGCATTGGTAAAACGACTATTGCAAAAGCCATTTACAATAAGATTGGCCGCAATTTTGAGGGAAAAAGCTTCCTCGCACATATTAGGGAAGTTTGGGAGCAAGATGCTGGTCAAGTATATCTACAAGAACAACTTCTATTTGATATCGAAAAAGACACAAACACAAAGATACGTGATGTTGATTCAGGAAAAGTTATGTTGAAAGAACGACTTCGCCATAAAAGGGTACTTCTTATACTTGATGATGTAAATAATTTGCATCAATTGAATGTTTTGTGTGGAAGTCGTGAATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACTAGAGATATGCATATACTTAGAGGGAGAAGAGTTGACAAAGTGTTCAGAATGAAAGGGATGAATGAAGATGAATCTATTGAGCTTTTTAGTTGGCATGCATTTAAGCAAGCAAGTCCAAGAGAAGATTTTATTGAACTTTCTAGAAATGTAGTTGCTTATTCTGCGGGATTGCCACTAGCTCTTGAAGTCCTTGGGTCCTATTTGTTTGATATGGAGGTTACAGAGTGGAAGAATGTATTGGAGAAACTCAAGAAAATTCCTAATGGTGAAGTACAAGAGAAATTAAAAATAAGCTATGATGGTTTAACTGATGATACAGAGAAAGGAATATTCCTTGATATAGCTTGTTTCTTTATAGGAATGGACCGGAATGATGTTATACATATATTAAATGGTTGTGGGCTTTGTGCAGAAAATGGAATACGTGTCTTGGTAGAAAGAAGCCTTGTAACTGTAGATTATAAGAACAAGCTTGGAATGCATGATTTGCTGCGAGACATGGGAAGAGAAATCATTCGTTCAAAAACACCAATGGAGCTTGAGGAGCGTAGTAGGTTATGGGTTCATGAAGATGCGCTTGATGTATTATCAAAAGAAACTGGAACAAAAGCTATTGAGGGACTGGCTTTGAAGTTACCAAGAACTAATACAAAATGTTTGAGCACTAAAGCTTTTAAGGAGATGAAAAAACTCAGGTTGCTTCAACTTGCTGGTGTACAACTGGTTGGAGATTTCAAGTATCTTTCCAAAGATCTTAGATGGCTTTGTTGGCATGGATTTCCTTTAGCATGCATACCAACAAACCTTTATCAAGGAAGTCTAGTTTCCATTGAGCTAGAAAACAGCAATGTTAATCTTTTGTGGAAAGAAGCCCAGGTAATGGAGAAGCTGAAAATTCTTAATCTCAGTCATTCTCATTATTTAACACAGACTCCAGACTTTTCAAATTTGCCTAATCTTGAAAAGCTATTACTCATAGATTGTCCAAGGTTGTCCGAGATTTCCTATACCATTGGACATCTCAATAAAGTTCTTCTAATAAATTTTCAAGATTGTATTAGCCTTCGTAAGCTTCCAAGAAGTATCTATAAGTTGAAATCTCTTAAAGCACTCATTCTTTCAGGATGTTTAAAGATTGACAAGTTAGAAGAGGATTTGGAACAAATGGAGTCTTTGACAACCCTTATTGCGGATAAGACTGCAATAACAAGAGTGCCATTTTCAATAGTTAGATCAAAAAGAATTGGATATATCTCTTTGTGCGGCTATGAAGGATTCTCACGTGATGTGTTTCCTTCAATCATTTGGTCTTGGATGTCACCCACAAATAGTCTCTCATCCCGCGTTCAAACATTTCTAGATGTGTCATCTCTCGTTTCTTTAGACGTGCCAAATAGTAGTTCCAATCATCTATCATATATTTCTAAGGACCTTCCACTGCTTCAAAGTCTTTGTATAGAGTGTGGCTCAGAACTTCAACTTTCTATAGATGCTGCAAATATTTTGGATGCTTTATATGCCACAAATTTTGAAGAATTGGAATCAACTGCAGCCACATCGCAAATGCATAATATGAATGTTTTAACATTAATTGAATGCAACAATCAAGTACACAACTTAGGATCAAAAAATTTCAGGAGATCACTTTTAATTCAAATGGGAACGAGTTGTCAAGTCACCAATATTCTGAAACAGAGAATTTTACAGAATATGGCTACTAGTGATGGTGGTGGTTGTTTGCTCCCCGGTGATAGCTATCCTGATTGGTTAACCTTCAACAGCGAAGGTTCATCCGTGACTTTTGAAATCCCTCAAGTGAAAGGGCGTAACTTGAAGAAAATGATGTGCCATGTCCATTATTCTTCCCCGGAAAATATAACTTCAGATGGTTTGAAAAATTTGTTGGTGATAAATCACACAAAGGCCATCATTCAACTTTATAAGAGAAATGCATTAGTCTCCTTTGAAGATGAGGAGTGGCAGGGGGTACTATCAAAAATAGAGCCTGCAAACAAAGTGCAAATTGTTGTTGTCTTCTGGAGCAAATTAACTGTTTACAAGACAACAATTTATCTCATATATGAACCAATGAATGAAAAAATAGAGCATTCCCGTGCACGAAATAAGAATGTAATGGATTCTAGTGGTGATGAAAATGAATGTGTTGTTGGGACCATCTCTCTTCAAGTAGAATCCATATATAAGCCAACAAATGACATAATGGAGCATTGCCATGCATCAAATAAGAATGCAATTGTTTCCAGCAGTGATGAAAATGCATGTGTTGTCAGGCCGTTCTCTCCTCAAGTGGAATCCATAGATGACTTAAGGTGTGTTTCAAAAAAAGGCTTGATTAAGCGCTTATTGAATAAGTTATTATCATGTGAATACTTTTGTAATGCAAACTCAGAAAATATGAAAAATCAAGGTTAA 4209 0.3953 MSSASSYDSDLHDEEMEMDFLRERYEEDNRSYDVFLSFRGEDTRASFTSHLYTALHDAGVFVFKDDETLPRGNKISPWLQLAIEESRVSVVVFSRNYAESRWCLKELEKIMECHRTTGHVVVPVFYDVDPSEVRHQTGHFGTAFRNLENRLLKVEVEGLQRWWETLAEAAGISGLSVVRYCNLRREVGDKICLLAQHWREALREAAGILGDSVSDLGEMDIASKIDYFVERWRDGLCVATRIPWRGMLIAEKLIDLLVKHWRETLCEALCEAVGFSDGADLYYREIEMVYKIEQLVVNWSTALCEAAGSISGGAHLNSKGGKFANEISLLMKHWREAHCEHSGIPLAFLLNFSVEEEIIRDFKDLMMSWKEALREAAGISRVVVLNYRGKVKIAAKEINILVKHWAEALCEAASISGIVVLNSRNESEAIKTIVENVTRLLDKTELFVADNPVGVEPRVQEMIELIDQKQSNDVLVLGMWGMGGIGKTTIAKAIYNKIGRNFEGKSFLAHIREVWEQDAGQVYLQEQLLFDIEKDTNTKIRDVDSGKVMLKERLRHKRVLLILDDVNNLHQLNVLCGSREWFGSGSRIIITTRDMHILRGRRVDKVFRMKGMNEDESIELFSWHAFKQASPREDFIELSRNVVAYSAGLPLALEVLGSYLFDMEVTEWKNVLEKLKKIPNGEVQEKLKISYDGLTDDTEKGIFLDIACFFIGMDRNDVIHILNGCGLCAENGIRVLVERSLVTVDYKNKLGMHDLLRDMGREIIRSKTPMELEERSRLWVHEDALDVLSKETGTKAIEGLALKLPRTNTKCLSTKAFKEMKKLRLLQLAGVQLVGDFKYLSKDLRWLCWHGFPLACIPTNLYQGSLVSIELENSNVNLLWKEAQVMEKLKILNLSHSHYLTQTPDFSNLPNLEKLLLIDCPRLSEISYTIGHLNKVLLINFQDCISLRKLPRSIYKLKSLKALILSGCLKIDKLEEDLEQMESLTTLIADKTAITRVPFSIVRSKRIGYISLCGYEGFSRDVFPSIIWSWMSPTNSLSSRVQTFLDVSSLVSLDVPNSSSNHLSYISKDLPLLQSLCIECGSELQLSIDAANILDALYATNFEELESTAATSQMHNMNVLTLIECNNQVHNLGSKNFRRSLLIQMGTSCQVTNILKQRILQNMATSDGGGCLLPGDSYPDWLTFNSEGSSVTFEIPQVKGRNLKKMMCHVHYSSPENITSDGLKNLLVINHTKAIIQLYKRNALVSFEDEEWQGVLSKIEPANKVQIVVVFWSKLTVYKTTIYLIYEPMNEKIEHSRARNKNVMDSSGDENECVVGTISLQVESIYKPTNDIMEHCHASNKNAIVSSSDENACVVRPFSPQVESIDDLRCVSKKGLIKRLLNKLLSCEYFCNANSENMKNQG* 1403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0401 1402 Pfam TIR domain 32 168 IPR000157 GO:0007165
Gso3g0401 1402 Gene3D - 438 605 IPR027417 -
Gso3g0401 1402 Gene3D - 611 695 IPR042197 -
Gso3g0401 1402 SUPERFAMILY L domain-like 801 1130 - -
Gso3g0401 1402 Coils Coil 971 991 - -
Gso3g0401 1402 SMART till_3 31 172 IPR000157 GO:0007165
Gso3g0401 1402 Pfam NB-ARC domain 458 688 IPR002182 GO:0043531
Gso3g0401 1402 CDD AAA 453 610 - -
Gso3g0401 1402 Gene3D Ribonuclease Inhibitor 795 1016 IPR032675 -
Gso3g0401 1402 SMART AAA_5 473 613 IPR003593 -
Gso3g0401 1402 Coils Coil 11 31 - -
Gso3g0401 1402 Gene3D - 389 437 IPR035897 -
Gso3g0401 1402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 440 706 IPR027417 -
Gso3g0401 1402 Gene3D - 26 194 IPR035897 -
Gso3g0401 1402 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 38 1284 IPR044974 GO:0006952
Gso3g0401 1402 SUPERFAMILY Toll/Interleukin receptor TIR domain 22 174 IPR035897 -
Gso3g0401 1402 PRINTS Disease resistance protein signature 476 491 - -
Gso3g0401 1402 PRINTS Disease resistance protein signature 553 567 - -
Gso3g0401 1402 PRINTS Disease resistance protein signature 646 660 - -
Gso3g0401 1402 PRINTS Disease resistance protein signature 884 900 - -
Gso3g0401 1402 SUPERFAMILY "Winged helix" DNA-binding domain 682 788 IPR036390 -
Gso3g0401 1402 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 38 1284 - -
Gso3g0401 1402 ProSiteProfiles TIR domain profile. 30 170 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0401 Gso-Chr3 6414640 6438331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0401 403 1001 WRKY Transcription Factor Family AT4G12020 33.279 2.87e-74 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0401 - - gmx:100800776 2633.6