Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0394 ATGGGACACAACAACACTTGTCATCATCATGTCAAAGGTTTCCACGCAGACCCTTTTAGCCATAGCCTCTCTTCTGCTTCAAATGGTGGTGATAGGAGAAGAAAATGTGGGAACAATGAAAAAAGTGGTGGTAGTGGTTTCATTTTCTTACCCTTTTTTCTGTTTCTTTTGATTTCCACTTCCACCATTCAGCATGTTTCAGGCCACTTGTGGGATGGGGTGGTTGTGACTCAGGCTGATTTTCAAGCCCTTAGGGCTATTAAGAATGAGATCATTGACATCAGAGGGGTGTTGAAAAGCTGGAATGACAGTGGTGTAGGTGCTTGTTCAGGAGGTTGGGCTGGAATCAAGTGCGTGAATGGTGAGGTTATTGCAATTCAGCTTCCTTGGAGAGGGTTGGGTGGCAGAATCTCTGAGAAAATTGGCCAACTTCAGTCTCTTAGGAAGCTCAGTCTCCATGACAATGCTCTTGGTGGTTCAGTTCCTTTCACCCTTGGTTTGCTTCCTAACCTTAGAGGAGTTTATCTCTTCAACAACAAGCTTTCAGGTTCTATCCCTCCTTCCCTGGGAAACTGTCCAATTCTTCAGTCTCTGGATATTAGCAACAATTCCCTCAGTGGTAAAATCCCTCCTAGTTTAGCAAGATCTTCTAGGATATTCAGGATCAATTTGAGCTTCAACTCACTTTCCGGATCCATTCCTAGTAGTCTCACTATGTCTCCTTCTCTAACCATTCTTGCACTTCAACACAACAATCTCTCTGGTTTTATCCCAGATTCTTGGGGTGGAACTGGAAAGAAGAAAGCTTCCCAGCTTCAAGTTTTGACCCTTGATCACAATCTTATTTCTGGAACCATTCCTGTTTCTCTAGGGAAGCTTGCTTTGCTTGAAAATGTTTCTTTGAGTCATAACCAGATTGTAGGGGCTATTCCAAGTGAGCTAGGTGCACTTTCCAGGCTTCAGATTCTTGATTTATCAAACAATGCCATTAATGGAAGCCTTCCTGCTAGCTTCTCTAACCTCTCCTCTCTTGTTTCATTGAATCTAGAAAGCAATCAACTTGCAAACCATATTCCAGATTCTATGGACAGGTTGCACAACCTTTCCGTGCTTAACCTGAAGAACAATAAGCTTGATGGCCAAATCCCACCATCACTTGGGAACATCTCAAGCATTATCCAAATTGATTTCTCTGAGAATAAATTAGTTGGAGAAATCCCAGATTCCCTTACCAAACTTGCAAAACTCACTTCATTCAATGTCTCTTACAACAACCTATCTGGTACTGTCCCATCTCTACTTTCCAAAAGATTCAATGCTACCTCTTTTGAAGGGAATCTTGAGCTATGTGGATTCATCAGTTCAAAACCATGTTCTTCACCTGCTCCTCATAATCTTCCAGCTCAATCACCACATGCTCCTCCGAAGCCGCATCACCGCAAACTAAGCACCAAAGACATAATCCTCATAGTTGCAGGTATTCTCTTGTTGATTCTGTTAGTACTGTGCTGCTTCTTGCTGTGTTGTTTGATCAGAAGAAGAGCTGCTTCAAGCAGAAAGAGTAGCAAGACTGCTAAGGCTGCAGCATCTGCCAGGGGTGTTGAGAAAGGTGCCTCAGCTGGTGGTGAAGTTGAATCAGGAGGTGAAGCTGGTGGGAAACTAGTTCACTTTGATGGCCCTTTTGTGTTTACTGCTGATGATCTTTTGTGTGCAACTGCGGAGATAATGGGAAAAAGTGCATTTGGGACAGCATACAAAGCAACACTAGAAGATGGTAACCAAGTTGCTGTGAAGAGGTTGAGGGAAAAGACCACTAAAGGGCAGAAGGAGTTTGAAACTGAGGTTGCTGCACTTGGCAAAATCAGACACCCAAATCTCTTGGCACTTAGAGCCTACTATTTAGGACCAAAAGGAGAGAAGCTTCTTGTGTTTGATTACATGACCAAAGGAAGCCTAGCATCATTCCTTCATGCTCGAGGGCCTGAAATTGTTATTGAATGGCCAACAAGGATGAAGATAGCAATGGGAGTCACTCACGGCTTGAGCTACCTCCACAGCCAAGAGAACATCATACACGGGAACCTCACATCAAGCAACATACTATTGGATGAGCAAACAGAAGCTCACATAACAGATTTTGGCCTCTCAAGGCTGATGACAACTTCTGCCAACACCAACATCATTGCCACCGCAGGAAGTCTTGGCTACAACGCACCAGAGCTTTCAAAGACCAAGAAGCCTACCACAAAGACTGATGTGTACAGCCTTGGTGTCATCATGCTGGAGCTCCTGACCGGGAAACCGCCCGGGGAGCCAACCAATGGCATGGACTTGCCACAATGGGTGGCATCCATAGTGAAGGAAGAGTGGACTAATGAAGTGTTTGATTTGGAGCTCATGAGGGATGCACCAGCCATAGGAGATGAATTGCTTAACACATTGAAGTTAGCATTGCATTGTGTGGATCCTTCTCCTGCTGCTAGGCCTGAAGTTCATCAAGTTCTACAGCAATTGGAGGAGATTAAACCAGACTTAGCTTCAGGGGATGATGATGGAGCTAAGGCCCAAGAAACTGAGTAA 2580 0.4434 MGHNNTCHHHVKGFHADPFSHSLSSASNGGDRRRKCGNNEKSGGSGFIFLPFFLFLLISTSTIQHVSGHLWDGVVVTQADFQALRAIKNEIIDIRGVLKSWNDSGVGACSGGWAGIKCVNGEVIAIQLPWRGLGGRISEKIGQLQSLRKLSLHDNALGGSVPFTLGLLPNLRGVYLFNNKLSGSIPPSLGNCPILQSLDISNNSLSGKIPPSLARSSRIFRINLSFNSLSGSIPSSLTMSPSLTILALQHNNLSGFIPDSWGGTGKKKASQLQVLTLDHNLISGTIPVSLGKLALLENVSLSHNQIVGAIPSELGALSRLQILDLSNNAINGSLPASFSNLSSLVSLNLESNQLANHIPDSMDRLHNLSVLNLKNNKLDGQIPPSLGNISSIIQIDFSENKLVGEIPDSLTKLAKLTSFNVSYNNLSGTVPSLLSKRFNATSFEGNLELCGFISSKPCSSPAPHNLPAQSPHAPPKPHHRKLSTKDIILIVAGILLLILLVLCCFLLCCLIRRRAASSRKSSKTAKAAASARGVEKGASAGGEVESGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAFGTAYKATLEDGNQVAVKRLREKTTKGQKEFETEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMTKGSLASFLHARGPEIVIEWPTRMKIAMGVTHGLSYLHSQENIIHGNLTSSNILLDEQTEAHITDFGLSRLMTTSANTNIIATAGSLGYNAPELSKTKKPTTKTDVYSLGVIMLELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMRDAPAIGDELLNTLKLALHCVDPSPAARPEVHQVLQQLEEIKPDLASGDDDGAKAQETE* 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0394 859 Pfam Leucine rich repeat 296 354 IPR001611 GO:0005515
Gso3g0394 859 Pfam Leucine Rich Repeat 195 213 IPR001611 GO:0005515
Gso3g0394 859 Gene3D Transferase(Phosphotransferase) domain 1 648 855 - -
Gso3g0394 859 PRINTS Leucine-rich repeat signature 195 208 - -
Gso3g0394 859 PRINTS Leucine-rich repeat signature 317 330 - -
Gso3g0394 859 Gene3D Ribonuclease Inhibitor 358 452 IPR032675 -
Gso3g0394 859 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 28 846 - -
Gso3g0394 859 Pfam Protein tyrosine and serine/threonine kinase 573 838 IPR001245 GO:0004672|GO:0006468
Gso3g0394 859 MobiDBLite consensus disorder prediction 843 859 - -
Gso3g0394 859 Gene3D Ribonuclease Inhibitor 267 357 IPR032675 -
Gso3g0394 859 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 28 846 - -
Gso3g0394 859 MobiDBLite consensus disorder prediction 839 859 - -
Gso3g0394 859 SUPERFAMILY Protein kinase-like (PK-like) 574 843 IPR011009 -
Gso3g0394 859 ProSiteProfiles Protein kinase domain profile. 570 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0394 859 Pfam Leucine rich repeat N-terminal domain 79 118 IPR013210 -
Gso3g0394 859 Gene3D Phosphorylase Kinase; domain 1 576 647 - -
Gso3g0394 859 SUPERFAMILY L domain-like 117 450 - -
Gso3g0394 859 Gene3D Ribonuclease Inhibitor 76 266 IPR032675 -
Gso3g0394 859 CDD STKc_IRAK 576 841 - -
Gso3g0394 859 SMART LRR_typ_2 168 192 IPR003591 -
Gso3g0394 859 SMART LRR_typ_2 144 167 IPR003591 -
Gso3g0394 859 SMART LRR_typ_2 365 389 IPR003591 -
Gso3g0394 859 SMART LRR_typ_2 341 364 IPR003591 -
Gso3g0394 859 SMART LRR_typ_2 241 263 IPR003591 -
Gso3g0394 859 SMART LRR_typ_2 317 340 IPR003591 -
Gso3g0394 859 SMART LRR_typ_2 413 436 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0394 Gso-Chr3 6161411 6165353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0394 69 843 Receptor kinase-like Gene Family AT3G51740 68.974 0.0 1035
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso3g0394 PK_Tyr_Ser-Thr 2.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0394 - - gmx:100819102 1566.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0394 3 6161411 6165353 Gso3g0394 3 6161411 6165353 ECH