Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0392 ATGGCTGAGGCAGTTGGTGGTGCGTTTCTCTCTGCTTTCCTTGATGTCGTGTTCGACAAGCTTGCTACCGATGAGGTTGTTGACTTCATCCGTGGAAAGAAGGTTGACCTCAATTTGCTTGAGAACTTGAAGAGCACTCTGAGAGTGGTTGGAGCTGTGCTTGATGATGCTGAGAAGAAACAAACCAAACTCTCCAGTGTCAACCAGTGGCTCATTCAGCTCAAGGATGTTCTCTACGAGGCCGATGACATGCTGGATGAAATTTCAACCAAAGCTGCAACTCAAAAGAAGGTAAGTAAAGTGTTTTCTCGATTTACTGATAGGAAAATGGCCAGTAAGTTGGAAAAAGTAGTTGGCAATTTGGATAAAGTTTTAAGAGGCATGGAGGGTCTTCCTTTGCAAGTGATGGCAGGGGAGAGCAACGAGCCATGGAATGCCCAGCCAACAACATCTCTGGAAGATGGATATGATATGTATGGTAGGGATACAGACAAGGAGGCCATAATGGAGTTGGTAAAGGATAGCAGTGATGGCGTACAAGTGTCTGTTATCGCTATTGTAGGCATGGGTGGGGTTGGAAAAACCACTCTAGCCCGATCTGTGTTCAACGATGGCAATTTGAAGCAAATGTTTGATTTAAATGCATGGGTTTGTGTTTCTGATCAATTTGATATTGTGAAGGTCACAAAAACTATGATAGAGCAAATTACGCAAAAGTCTTGTAAATTGGATGATCTAAACTTACTTCAACTTGAATTGATGGACAAGCTAAAAGATAAAAAATTCTTAATTGTCTTGGATGATGTATGGATCGAGGATTATGATAATTGGAGTAATCTTATAAAACCATTTCTAAATGGGACAAGGGGAAGTAAAATTCTCTTGACAACTCGCAATGAAAATGTAGCGAATGTAGTACCTTACCATATTGTTCAAGTTTATCCTCTAAATAAATTGTCAAATGAAGATTGTTGGCTAGTGTTTGCAAACCACGCATTTCCTCCGTCAGAATCAAGTGGCGAGGATAAAAGAGCTTTAGAAAAAATTGGAAGGGAGATTATTAAAAAGTGTAATGGATTGCCTTTAGCAGCACGGTCACTCGGGGGTATGCTGAGAAGAAAACATGCTATTAGGGATTGGAATAATATACTTGAAAGTGACATTTGGGAACTTCCTGAAAGTCATCGTAAAATTATTCCAGCTTTGAGAATCAGTTATCATTATCTCCCTCCACGTCTGAAACGATGCTTTGTTTATTGTTCATTATACCCCAAAGATTATGAATTTCAAAAAAATGAATTGATCTTGTTGTGGATGGCTGAAGATCTTTTGAAGTTTCCAAACAAAGGAAAGGCGTTAAAAGTTGGTTACGAGTATTTTGATGATTTAGTTTCGAGATCATTTTTTCAACGTTCAAGTAATCAAACTTGGGGCAATTATTTTGTAATGCATGACCTCGTGCATGATCTAGCATTATCCCTTGGTGGAGAATTCTATTTCAGATCAGAAGAACTTGGAAAAGAAACCAAGATTGGTATGAAGACTCGTCATTTGTCAGTTACAAAGTTCAGTGATCCAATCTCAGACATTGAAGTTTTTGACAAACTACAATTTTTGAGAACTTTCTTGGCAATTGATTTTAAAGATTCTCCGTTCAACAAGGAAAAGGCACCAGGTATTGTAGTGTCGAAGCTTAAGGGCTTGAGAGTCTTATCATTTTGTGACTTTGCAAGTCTGGATGTTTTGCCTGATTCAATAGGTAAATTGATCCATTTGCGTTATTTAAATCTGTCTTCTACAAGAATAAAAACACTGCCGGAGTCATTGTGTAATTTGTACAATCTACAAACTCTGGTGTTGTCTCATTGTGGAGTGTTGACCAGGTTGCCTACTGACATGCAAAATCTTGTCAACTTGTGTCATCTTCATATTAATGGTACTCATATACAAGAGATGCCTAGAGGCATGGGAATGTTCAGTCATTTGCAACATTTGGATTTCTTTATTGTGGGTAAGCACAAAGAGAACGGAATCAAAGAACTGGGGACACTTTCAAATCTTCATGGTTCACTTTCTATTAGTAATTTGGAGAATGTAACCAGAAGCAATGAAGCATTGGAGGCTAGGATGATGGATAAGAAGAACATTAATGATTTATCGTTGGAATGGTGGTCTAATGGCACCGACTTCCAAATTGAATTTCATGTACTGTGCAAATTAAAACCTCACCAAGGCCTGGAATCTCTAACAATATGGGGTTATAATGGAACCATACTTCCAGATTGGGTGGGAAATTTTTCCTACCACAAGATGACAACTCTATGTTTAAGTTATTGTGAAAACTGTTGTGTGCTTCCTTCACTTGGGCAACTACCGTCTCTTAAGAAGCTCTATATTTCAAGATTGAATTCAGTGAAGAAGGTTGATGCAGGGTTTTACAAAATTGAAGATTGTCCTTCTGTGACACCCTTTTCCTCCCTTGAATATCTAGAGATTAGTTTCATGTGTTGCTGGGAGTTGTGGAGTTTCCCTGAGTCAGACGCCTTTCCTCTACTCAAGTCTCTTACAATAGCGTATTGCCCCAAACTAAGGGGAGATTTGCCAAATCACCTTCCTGCTCTGGAAACACTTGAGATTAGAAATTGCGAGCTTCTTGTCTCTTCTCTCCCAAGGGCTCCCATCCTTAAGAGATTAGAGATATGTAAAAGCAATAATGTATCGTTGCATGTGTTTCCACTTTTGTTGGAATCGATAGAAGTAGAAGGAAGCCCAATGGTGGAGTCCATGATCGAGGCCATCACCATCATCGAGCCAACTTGCCTCCAACATTTAAAATTGCGTGATTATTCGTCAGCCATATCTTTTCCGGGTGGTCGTCTACCTGCATCTCTGAAGGCTCTGCATATCAGAAATCTTAAAAATCTGGAATTCCCGACACAACACAAACATGAGTTACTGGAAACACTGTTACTATATAATAGTTGTGATTCTCTCATGTCCCTTCCATTGGTTACCTTTCCAAATCTTAAAAAGCTCCGAATTGAAAACTGCAAAAGTATGGAATCTCTTTTTGGTTTCAGGGTCAGAGTCATTTAA 3096 0.3908 MAEAVGGAFLSAFLDVVFDKLATDEVVDFIRGKKVDLNLLENLKSTLRVVGAVLDDAEKKQTKLSSVNQWLIQLKDVLYEADDMLDEISTKAATQKKVSKVFSRFTDRKMASKLEKVVGNLDKVLRGMEGLPLQVMAGESNEPWNAQPTTSLEDGYDMYGRDTDKEAIMELVKDSSDGVQVSVIAIVGMGGVGKTTLARSVFNDGNLKQMFDLNAWVCVSDQFDIVKVTKTMIEQITQKSCKLDDLNLLQLELMDKLKDKKFLIVLDDVWIEDYDNWSNLIKPFLNGTRGSKILLTTRNENVANVVPYHIVQVYPLNKLSNEDCWLVFANHAFPPSESSGEDKRALEKIGREIIKKCNGLPLAARSLGGMLRRKHAIRDWNNILESDIWELPESHRKIIPALRISYHYLPPRLKRCFVYCSLYPKDYEFQKNELILLWMAEDLLKFPNKGKALKVGYEYFDDLVSRSFFQRSSNQTWGNYFVMHDLVHDLALSLGGEFYFRSEELGKETKIGMKTRHLSVTKFSDPISDIEVFDKLQFLRTFLAIDFKDSPFNKEKAPGIVVSKLKGLRVLSFCDFASLDVLPDSIGKLIHLRYLNLSSTRIKTLPESLCNLYNLQTLVLSHCGVLTRLPTDMQNLVNLCHLHINGTHIQEMPRGMGMFSHLQHLDFFIVGKHKENGIKELGTLSNLHGSLSISNLENVTRSNEALEARMMDKKNINDLSLEWWSNGTDFQIEFHVLCKLKPHQGLESLTIWGYNGTILPDWVGNFSYHKMTTLCLSYCENCCVLPSLGQLPSLKKLYISRLNSVKKVDAGFYKIEDCPSVTPFSSLEYLEISFMCCWELWSFPESDAFPLLKSLTIAYCPKLRGDLPNHLPALETLEIRNCELLVSSLPRAPILKRLEICKSNNVSLHVFPLLLESIEVEGSPMVESMIEAITIIEPTCLQHLKLRDYSSAISFPGGRLPASLKALHIRNLKNLEFPTQHKHELLETLLLYNSCDSLMSLPLVTFPNLKKLRIENCKSMESLFGFRVRVI* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0392 1031 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 420 IPR027417 -
Gso3g0392 1031 PRINTS Disease resistance protein signature 183 198 - -
Gso3g0392 1031 PRINTS Disease resistance protein signature 256 270 - -
Gso3g0392 1031 PRINTS Disease resistance protein signature 357 371 - -
Gso3g0392 1031 PRINTS Disease resistance protein signature 869 885 - -
Gso3g0392 1031 PANTHER OS05G0414200 PROTEIN 13 1024 - -
Gso3g0392 1031 Pfam Leucine rich repeat 579 623 IPR001611 GO:0005515
Gso3g0392 1031 Pfam Rx N-terminal domain 9 97 IPR041118 -
Gso3g0392 1031 SMART LRR_typ_2 589 612 IPR003591 -
Gso3g0392 1031 SMART LRR_typ_2 636 659 IPR003591 -
Gso3g0392 1031 Coils Coil 40 60 - -
Gso3g0392 1031 Gene3D Ribonuclease Inhibitor 530 936 IPR032675 -
Gso3g0392 1031 Gene3D - 17 120 - -
Gso3g0392 1031 Coils Coil 696 716 - -
Gso3g0392 1031 Gene3D - 405 493 IPR036388 -
Gso3g0392 1031 SUPERFAMILY L domain-like 482 901 - -
Gso3g0392 1031 Pfam NB-ARC domain 163 406 IPR002182 GO:0043531
Gso3g0392 1031 Gene3D - 146 312 IPR027417 -
Gso3g0392 1031 Gene3D - 318 404 IPR042197 -
Gso3g0392 1031 CDD AAA 164 269 - -
Gso3g0392 1031 PANTHER DISEASE RESISTANCE PROTEIN RP 13 1024 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0392 Gso-Chr3 6113856 6119142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0392 179 491 WRKY Transcription Factor Family AT5G45050 24.540 1.17e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0392 - - gsj:114406053 1848.56