Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0390 ATGGCCAGTAAGTTGGAAAAAGTAGTTGGCAATTTGGATAAAGTTTTAAGAGGCATGGAGGGTCTTCCTTTGCAAGTGATGGCAGGGGAGAGCAACGAGCCATGGAATGCCCAGCCAACAACATCTCTGGAAGATGGATATGATATGTATGGTAGGGATACAGACAAGGAGGCCATAATGGAGTTGGTAAAGGATAGCAGTGATGGCGTACAAGTGTCTGTTATCGCTATTGTAGGCATGGGTGGGGTTGGAAAAACCACTCTAGCCCGATCTGTGTTCAACGATGGCAATTTGAAGCAAATGTTTGATTTAAATGCATGGGTTTGTGTTTCTGATCAATTTGATATTGTGAAGGTCACAAAAACTATGATAGAGCAAATTACGCAAAAGTCTTGTAAATTGGATGATCTAAACTTACTTCAACTTGAATTGATGGACAAGCTAAAAGATAAAAAATTCTTAATTGTCTTGGATGATGTATGGATCGAGGATTATGATAATTGGAGTAATCTTATAAAACCATTTCTAAATGGGACAAGGGGAAGTAAAATTCTCTTGACAACTCGCAATGAAAATGTAGCGAATGTAGTACCTTACCATATTGTTCAAGTTTATCCTCTAAATAAATTGTCAAATGAAGATTGTTGGCTAGTGTTTGCAAACCACGCATTTCCTCCGTCAGAATCAAGTGGCGAGGATAAAAGAGCTTTAGAAAAAATTGGAAGGGAGATTATTAAAAAGTGTAATGGATTGCCTTTAGCAGCACGGTCACTCGGGGGTATGCTGAGAAGAAAACATGCTATTAGGGATTGGAATAATATACTTGAAAGTGACATTTGGGAACTTCCTGAAAGTCATCGTAAAATTATTCCAGCTTTGAGAATCAGTTATCATTATCTCCCTCCACGTCTGAAACGATGCTTTGTTTATTGTTCATTATACCCCAAAGATTATGAATTTCAAAAAAATGAATTGATCTTGTTGTGGATGGCTGAAGATCTTTTGAAGTTTCCAAACAAAGGAAAGGCGTTAAAAGTTGGTTACGAGTATTTTGATGATTTAGTTTCGAGATCATTTTTTCAACGTTCAAGTAATCAAACTTGGGGCAATTATTTTGTAATGCATGACCTCGTGCATGATCTAGCATTATCCCTTGGTGGAGAATTCTATTTCAGATCAGAAGAACTTGGAAAAGAAACCAAGATTGGTATGAAGACTCGTCATTTGTCAGTTACAAAGTTCAGTGATCCAATCTCAGACATTGAAGTTTTTGACAAACTACAATTTTTGAGAACTTTCTTGGCAATTGATTTTAAAGATTCTCCGTTCAACAAGGAAAAGGCACCAGGTATTGTAGTGTCGAAGCTTAAGGGCTTGAGAGTCTTATCATTTTGTGACTTTGCAAGTCTGGATGTTTTGCCTGATTCAATAGGTAAATTGATCCATTTGCGTTATTTAAATCTGTCTTCTACAAGAATAAAAACACTGCCGGAGTCATTGTGTAATTTGTACAATCTACAAACTCTGGTGTTGTCTCATTGTGGAGTGTTGACCAGGTTGCCTACTGACATGCAAAATCTTGTCAACTTGTGTCATCTTCATATTAATGGTACTCATATACAAGAGATGCCTAGAGGCATGGGAATGTTCAGTCATTTGCAACATTTGGATTTCTTTATTGTGGGTAAGCACAAAGAGAACGGAATCAAAGAACTGGGGACACTTTCAAATCTTCATGGTTCACTTTCTATTAGTAATTTGGAGAATGTAACCAGAAGCAATGAAGCATTGGAGGCTAGGATGATGGATAAGAAGAACATTAATGATTTATCGTTGGAATGGTGGTCTAATGGCACCGACTTCCAAATTGAATTTCATGTACTGTGCAAATTAAAACCTCACCAAGGCCTGGAATCTCTAACAATATGGGGTTATAATGGAACCATACTTCCAGATTGGGTGGGAAATTTTTCCTACCACAAGATGACAACTCTATGTTTAAGTTATTGTGAAAACTGTTGTGTGCTTCCTTCACTTGGGCAACTACCGTCTCTTAAGAAGCTCTATATTTCAAGATTGAATTCAGTGAAGAAGGTTGATGCAGGGTTTTACAAAATTGAAGATTGTCCTTCTGTGACACCCTTTTCCTCCCTTGAATATCTAGAGATTAGTTTCATGTGTTGCTGGGAGTTGTGGAGTTTCCCTGAGTCAGACGCCTTTCCTCTACTCAAGTCTCTTACAATAGCGTATTGCCCCAAACTAAGGGGAGATTTGCCAAATCACCTTCCTGCTCTGGAAACACTTGAGATTAGAAATTGCGAGCTTCTTGTCTCTTCTCTCCCAAGGGCTCCCATCCTTAAGAGATTAGAGATATGTAAAAGCAATAATGTATCGTTGCATGTGTTTCCACTTTTGTTGGAATCGATAGAAGTAGAAGGAAGCCCAATGGTGGAGTCCATGATCGAGGCCATCACCATCATCGAGCCAACTTGCCTCCAACATTTAAAATTGCGTGATTATTCGTCAGCCATATCTTTTCCGGGTGGTCGTCTACCTGCATCTCTGAAGGCTCTGCATATCAGAAATCTTAAAAATCTGGAATTCCCGACACAACACAAACATGAGTTACTGGAAACACTGTTACTATATAATAGTTGTGATTCTCTCATGTCCCTTCCATTGGTTACCTTTCCAAATCTTAAAAAGCTCCGAATTGAAAACTGCAAAAGTATGGAATCTCTTTTTGGTTTCAGGGTCAGAGTCATTTAA 2769 0.3835 MASKLEKVVGNLDKVLRGMEGLPLQVMAGESNEPWNAQPTTSLEDGYDMYGRDTDKEAIMELVKDSSDGVQVSVIAIVGMGGVGKTTLARSVFNDGNLKQMFDLNAWVCVSDQFDIVKVTKTMIEQITQKSCKLDDLNLLQLELMDKLKDKKFLIVLDDVWIEDYDNWSNLIKPFLNGTRGSKILLTTRNENVANVVPYHIVQVYPLNKLSNEDCWLVFANHAFPPSESSGEDKRALEKIGREIIKKCNGLPLAARSLGGMLRRKHAIRDWNNILESDIWELPESHRKIIPALRISYHYLPPRLKRCFVYCSLYPKDYEFQKNELILLWMAEDLLKFPNKGKALKVGYEYFDDLVSRSFFQRSSNQTWGNYFVMHDLVHDLALSLGGEFYFRSEELGKETKIGMKTRHLSVTKFSDPISDIEVFDKLQFLRTFLAIDFKDSPFNKEKAPGIVVSKLKGLRVLSFCDFASLDVLPDSIGKLIHLRYLNLSSTRIKTLPESLCNLYNLQTLVLSHCGVLTRLPTDMQNLVNLCHLHINGTHIQEMPRGMGMFSHLQHLDFFIVGKHKENGIKELGTLSNLHGSLSISNLENVTRSNEALEARMMDKKNINDLSLEWWSNGTDFQIEFHVLCKLKPHQGLESLTIWGYNGTILPDWVGNFSYHKMTTLCLSYCENCCVLPSLGQLPSLKKLYISRLNSVKKVDAGFYKIEDCPSVTPFSSLEYLEISFMCCWELWSFPESDAFPLLKSLTIAYCPKLRGDLPNHLPALETLEIRNCELLVSSLPRAPILKRLEICKSNNVSLHVFPLLLESIEVEGSPMVESMIEAITIIEPTCLQHLKLRDYSSAISFPGGRLPASLKALHIRNLKNLEFPTQHKHELLETLLLYNSCDSLMSLPLVTFPNLKKLRIENCKSMESLFGFRVRVI* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0390 922 PRINTS Disease resistance protein signature 74 89 - -
Gso3g0390 922 PRINTS Disease resistance protein signature 147 161 - -
Gso3g0390 922 PRINTS Disease resistance protein signature 248 262 - -
Gso3g0390 922 PRINTS Disease resistance protein signature 760 776 - -
Gso3g0390 922 PANTHER DISEASE RESISTANCE PROTEIN RP 6 763 IPR044974 GO:0006952
Gso3g0390 922 Gene3D - 296 384 IPR036388 -
Gso3g0390 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 311 IPR027417 -
Gso3g0390 922 SUPERFAMILY L domain-like 373 792 - -
Gso3g0390 922 CDD AAA 55 160 - -
Gso3g0390 922 Pfam NB-ARC domain 54 297 IPR002182 GO:0043531
Gso3g0390 922 Pfam Leucine rich repeat 470 514 IPR001611 GO:0005515
Gso3g0390 922 SMART LRR_typ_2 480 503 IPR003591 -
Gso3g0390 922 SMART LRR_typ_2 527 550 IPR003591 -
Gso3g0390 922 Gene3D - 209 295 IPR042197 -
Gso3g0390 922 Gene3D - 37 203 IPR027417 -
Gso3g0390 922 Gene3D Ribonuclease Inhibitor 421 827 IPR032675 -
Gso3g0390 922 PANTHER OS05G0414200 PROTEIN 6 763 - -
Gso3g0390 922 Coils Coil 587 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0390 Gso-Chr3 6035809 6040590 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0390 70 382 WRKY Transcription Factor Family AT5G45050 24.540 8.78e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0390 - - gsj:114406053 1848.56