Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0359 ATGTCTTTCAGTTTCACTGACCTTCTTTCTACTAACAACAACAATAGCTTGAACATGGATGATGATCCCTTTGGACTTGAATTTGCTAATAATTTCAAGTCAGCTTCACTGCCTCTCTCTCCTTCTTCAATCTACCCTTCTTCTTATGCTGAGTTCCCTCCTGGTTTTGTCCCAACTTCACAGTCATTGAATTCACACCACTTTTTTTCTTCTCAAATTGTTCCTGCATCTTACACAACTGAGCAATCTTCTAGCATGAGCTACAACATGAGAAACACTTCAACTGAGGGTCAACAAGGAAACAAGGAGGAAGAGAGAAACTACTCTGACCTCTCTTTCCTAACAAAAACAAACCACGTGCCTCTCTTTCAATCTTCCACAACCATGTTTCAAGTGGAGCCACTAAAGAAACAGGACACAATGATATCCAGTGAAGCTGCAAAGCAAACAGATTTCTCATCTGAGAGGACAGAAACAAAACCTGAATATCCATCTACTCAGGGCTTCTCAGCAGCATTAGCCTCAATCAAACCTGAAATACAAAGCAATTCTGCTCCTGGTTCTGTTCATTTTAACTCCACTTATGCTCCTAAGTCTATTAGGGAACAAAAGAGATCAGAAGATGGTTACAATTGGAGGAAGTATGGAGAGAAACAAGTGAAAGGAAGCGAAAATCCGCGTAGTTATTACAAGTGCACGCACCCGAGTTGTCCAACAAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACATATCACTGAAATAGTATACAAGGGAAGCCACAATCATCCCAAGCCACTTGGTAGAAAAAATGGTTCTCAATCAATTCATCAAACTTCTTCGTCCTGCACTAACTCAGGGATTTCTGATCAATCTGTGGGAGAGGAAGATCTTGAGCAAACATCACAGACTAGTTATTCTGGAGGGGGTGATGATGACCTTGGAAATGAGGCCAAAAGATGGAAGGGGGAGAATGAAAATGATGGCCATTCCTATTCTTCTGCTGGGAGTAGAACTGTTAAGGAACCTAGAGTTGTAGTTCAAACCACAAGTGAAATTGACATACTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAATCCAAACCCAAGGAGTTACTACAAATGTGTAGCCCCAGGTTGTCCAGTGAGAAAACATGTTGAGAGAGCTGCACATGATATGAAAGCTGTGATTACAACTTATGAAGGGAAACATATCCATGATGTACCTTTAGGACGAGGAAACTCAAGCTATAGCATGAACAGAACTTCTCTAAACAACAACACCAACACCAGCACCAGCAATGTAACAGCTCCTGCCCCTATTAGGCCCTCAGCAGTGACTAATTATTCTAACTCAGCAAGTTTCACAAACTCACTTCATGACACAAAGCCACCAACATCTGCAAGCCAAGAACCTTTTCCAATGGACGTGTTGCTGAGCCCCGGAAGTATCGGATTTGCGGCTAATGACCTGTTCCTTCAGTCTTTTTTGTCAAAGAACTTTTAA 1524 0.4154 MSFSFTDLLSTNNNNSLNMDDDPFGLEFANNFKSASLPLSPSSIYPSSYAEFPPGFVPTSQSLNSHHFFSSQIVPASYTTEQSSSMSYNMRNTSTEGQQGNKEEERNYSDLSFLTKTNHVPLFQSSTTMFQVEPLKKQDTMISSEAAKQTDFSSERTETKPEYPSTQGFSAALASIKPEIQSNSAPGSVHFNSTYAPKSIREQKRSEDGYNWRKYGEKQVKGSENPRSYYKCTHPSCPTKKKVERSLEGHITEIVYKGSHNHPKPLGRKNGSQSIHQTSSSCTNSGISDQSVGEEDLEQTSQTSYSGGGDDDLGNEAKRWKGENENDGHSYSSAGSRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVAPGCPVRKHVERAAHDMKAVITTYEGKHIHDVPLGRGNSSYSMNRTSLNNNTNTSTSNVTAPAPIRPSAVTNYSNSASFTNSLHDTKPPTSASQEPFPMDVLLSPGSIGFAANDLFLQSFLSKNF* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0359 507 MobiDBLite consensus disorder prediction 181 207 - -
Gso3g0359 507 MobiDBLite consensus disorder prediction 84 105 - -
Gso3g0359 507 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 13 505 - -
Gso3g0359 507 SUPERFAMILY WRKY DNA-binding domain 202 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso3g0359 507 ProSiteProfiles WRKY domain profile. 201 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g0359 507 Gene3D WRKY domain 342 408 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso3g0359 507 MobiDBLite consensus disorder prediction 327 342 - -
Gso3g0359 507 MobiDBLite consensus disorder prediction 181 199 - -
Gso3g0359 507 Pfam WRKY DNA -binding domain 356 412 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g0359 507 Pfam WRKY DNA -binding domain 207 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g0359 507 ProSiteProfiles WRKY domain profile. 350 415 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g0359 507 MobiDBLite consensus disorder prediction 266 309 - -
Gso3g0359 507 MobiDBLite consensus disorder prediction 312 326 - -
Gso3g0359 507 Gene3D WRKY domain 192 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso3g0359 507 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 13 505 IPR044810 GO:0003700
Gso3g0359 507 SMART WRKY_cls 206 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g0359 507 SMART WRKY_cls 355 414 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g0359 507 MobiDBLite consensus disorder prediction 146 165 - -
Gso3g0359 507 MobiDBLite consensus disorder prediction 255 342 - -
Gso3g0359 507 SUPERFAMILY WRKY DNA-binding domain 347 415 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0359 Gso-Chr3 5531121 5534558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0359 201 493 WRKY Transcription Factor Family AT2G38470 52.424 5.82e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso3g0359 WRKY 5.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0359 K13424 - gmx:102666898 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0359 3 5531121 5534558 Gso3g0359 3 5531121 5534558 ECH