Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0341 ATGGATTCTAGGCGGCGTAGTAAAAAAGCAGCTATGCAACGCAAGTTGCAACAACTTCGATCGGTTACAAATTCCAGTGCTGTGAACAAAGCCTCAATTATTGTGGATGCCACCAGATACATAGAGGAGCTGAAGCAAAAAGTTGATGGGTTGAACTCAGAGCTTGGAACCGCTGAATCATCCATCTCCCAAGACGAACTTCCCATGGTCACCGTAGAAACCCTAGAAAGGGGATTCCTCATTAATGTGTTTTCAGAAAGGAATTGCCCCGGTATGCTTGCGGCAATACTCGACGCCTTTGAAGAACTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGCGAAGACACCTTCCAGCTTGAAGCTGTCGGAGGAGAAAGTCAAGAGAATGAAAGCATCGACGCGCAAGTAGTGAAGCAAGCAGTGCTTCAAGCAATCCAAAACATGAATTAG 453 0.4614 MDSRRRSKKAAMQRKLQQLRSVTNSSAVNKASIIVDATRYIEELKQKVDGLNSELGTAESSISQDELPMVTVETLERGFLINVFSERNCPGMLAAILDAFEELGLDVLDARVSCEDTFQLEAVGGESQENESIDAQVVKQAVLQAIQNMN* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0341 150 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 150 - -
Gso3g0341 150 Gene3D - 1 67 IPR036638 GO:0046983
Gso3g0341 150 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 150 - -
Gso3g0341 150 Coils Coil 34 61 - -
Gso3g0341 150 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 62 IPR036638 GO:0046983
Gso3g0341 150 CDD ACT_UUR-ACR-like 90 146 - -
Gso3g0341 150 ProSiteProfiles ACT domain profile. 81 150 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0341 Gso-Chr3 5183953 5186116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0341 6 113 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 30.597 3.01e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0341 - - gmx:100499821 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0341 3 5183953 5186116 Gso18g0193 18 1672435 1674146 ECH
Gso3g0341 3 5183953 5186116 Gso3g0341 3 5183953 5186116 ECH
Gso3g0341 3 5183953 5186116 Gso11g1651 11 20603009 20606132 ECH