Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0330 ATGGCAGCAGCACTGGTCGGTGGTGCCTTTCTCTCTGCTTTCCTTGATGTGCTTTTCGACAGGCTGGCTTCACCTGAGTTTGTTGACCTGATCCGTGGAAAGAAGTTTAGCAAGAAGTTGCTTCAAAAGTTGGAGACCACTCTCAGAGTGGTTGGAGCTGTGCTTGATGATGCCGAGAAGAAACAGATCACAAACACCAATGTCAAACACTGGCTCAATGATCTCAAAGATGCTGTCTATGAAGCCGATGACTTACTCGACCATGTTTTCACCAAAGCTGCCACCCAAAACAAGGTAAGAGACTTGTTTTCTCGCTTTTCCGATAGGAAGATCGTTAGTAAGTTGGAGGACATAGTTGTCACCCTAGAGTCTCATTTAAAACTCAAGGAGAGTCTTGATTTGAAAGAGAGTGCAGTGGAGAACTTGTCATGGAAAGCTCCATCAACATCTCTGGAAGATGGATCTCATATATATGGTAGGGAGAAAGATAAGGAGGCCATAATCAAGTTATTGTCGGAGGATAACAGTGACGGTAGTGAAGTGTCTGTCGTTCCTATTGTGGGCATGGGTGGGGTTGGAAAAACTACTTTGGCCCAATTGGTGTACAACGATGAGAATTTGAAACAGAAATTTAATTTTGATTTTAAGGCATGGGTTTGTGTTTCTCAAGAATTTGATGTTCTGAAGGTCACAAAAACTATAATAGAGGCGGTTACTGGAAAGCCTTGTAAATTGAATGATCTGAATCTACTTCATCTTGAATTGATGGACAAGCTGAAAGATAAAAAATTCTTAATTGTCTTGGATGATGTTTGGACAGAGGATTATGTTGATTGGAGTCTTCTTAAGAAACCATTTAACCGTGGGATTAGGAGAAGTAAGATTCTTCTAACAACCCGCAGTGAAAAAACAGCATCTATAGTCCAAACTGTTCACACCTATCATCTAAACCAATTGTCGAATGAAGATTGTTGGTCAGTGTTTGCGAACCATGCGTGTCTTTCCTCCGAATCGAACAAGAACACAACAACCCTAGAAAAAATTGGAAAGGAGATTGTTAAAAAGTGCAACGGACTGCCTTTAGCAGCACAGTCGCTCGGAGGCATGTTGAGAAGAAAGCATGACATTGGTGATTGGAATAATATTCTGAATAATGACATTTGGGATCTTTCTGAAGGTGAGTGTAAAGTTATTCCAGCACTGAGACTTAGTTATCATTATCTCCCTCCACATTTAAAACGGTGCTTTGTTTATTGTTCCTTGTATCCACAAGATTACGAATTTGATAAAAATGAATTAATCTTGTTGTGGATGGCCGAAGATCTTTTGAAGAAACCAAGAAATGGTAGGACTTTAGAAGAGGTTGGTCATGAGTATTTTGATGATTTGGTTTCGAGATCATTTTTCCAACGTTCAAGTACAAATAGAAGTAGTTGGCCTTTTGGCAAATGTTTTGTGATGCATGACCTCATGCATGATCTAGCCACATCACTCGGTGGAGATTTTTACTTTAGATCAGAAGAACTTGGGAAAGAAACAAAGATCAACACCAAGACTCGTCATTTGTCATTTACCAAATTCAATTCTTCAGTCTTGGACAACTCTGATGATGTTGGTAGAACAAAATTTCTGAGAACTTTCTTGTCCATTATCAATTTTGAAGCTGCTCCATTCAAGAATGAGGAGGCACAATGTATCATAGTGTCGAAGCTTATGTACTTGAGAGTTTTATCATTTCGTGACTTTCGAAGTTTGGATTCTTTGCCTGATTCAATAGGTAAATTGATCCATCTGCGCTATTTAGATCTCTCTCATTCAAGTGTAGAAACACTGCCAAAGTCATTGTGTAATTTGTACAATCTGCAAACTTTGAAGTTGTTTGATTGCATAAAGCTGACTAAGTTGCCTAGTGACATGTGCAATCTTGTTAACTTGCGTCGTCTTGATATTTCTTGGACTCCTATAAAAGAGATGCCGAGAAGAATGAGTAAATTAAATCATCTACAACATCTGGATTTCTTTGTTGTGGGCAAGCACCAAGAGAATGGAATCAAAGAATTGGGAGGACTTCCAAATCTTCGTGGTCAACTTGAAATTAGGAACTTGGAGAATGTTTCCCAAAGTGATGAAGCGTTGGAGGCAAGGATAATGGATAAAAAACACATTAGTAGTTTGCGGCTGAAATGGTCTGGATGTAACAACAACAGTAACAACTTCCAACTTGAAATAGATGTGCTTTGCAAGTTACAGCCTCAATATAACATTGAATCGTTGGACATAAAAGGTTATAAAGGAACCAGATTTCCAGATTGGATGGGAAATTCTTCCTACTGCAATATGATTAGTCTAAAATTGCGTGATTGTGACAACTGTAGTATGCTTCCTTCACTTGGACAACTACCTTCTCTCAAGGACCTTCTAATTTCAAGATTGAATAGGCTGAAGACTATTGATGAAGGTTTTTACAAGAATGAAGATTGTCGTTCTGGAATGCCCTTTCCCTCCCTTGAATCTCTGTTCATTTATCACATGCCTTGTTGGGAGGTGTGGAGTTCGTTCAATTCAGAAGCTTTTCCTGTGCTTAAAAGTCTTGTAATAGATGACTGCCCCAAACTAGAGGGAAGTTTGCCGAATCACCTTCCTGCTCTGGAAATACTTTCAATTAGAAATTGCGAGCTGCTTGTCTCTTCTCTCCCAACGGGTCCCGCCATTCGAATTTTGGAGATAAGTAAAAGCAATAAAGTAGCACTGAATGTGTTTCCTCTCTTGGTAGAGACTATAGAAGTAGAAGGAAGCCCAATGGTGGAGTCCATGATAGAGGCCATCACTAAGATCCAACCAACATGTCTCCGGTCTTTAACATTAAGGGATTGCTCGTCAGCCGTGTCATTTCCGGGTGGTCGTTTACCTGAATCACTGAATAGTCTGAGTATCAAGGATCTTAAAAAACTGGAATTCCCGACGCAACACAAACATGAGTTACTGGAAACACTGTCAATACAAAGCAGTTGTGATTCACTCACATCTCTTCCATTGGTTACCTTTCCAAATCTCAGAGATCTTGAAACCATAAACTGTGAAAATATGAAATATCTTTTGGTTTCAGGGGCAGAGTCATTTAAGAGTCTGTGTTCTTTGAGAATTTACCAATGCCCCAACTTGATTAATTTCAGTGTTTCGGGCTCTGACAAGTTGAAGTCGTTGCCTGAAGAGATGAGTAGTCTTCTCCCAAAGTTAGAATGTCTCTACATATCCAACTGCCCAGAAATTGAGTCCTTTCCAAAACGGGGTATGCCACCTAACCTGAGAAAAGTTGAGATTGGCAATTGTGAGAAACTACTGAGCGGCCTAGCATGGCCATCCATGGGCATGCTTACTCATCTCTCTGTTTATGGTCCATGTGATGGCATCAAGTCCTTCCCTAAGGAGGGTTTGCTGCCTCCCACCCTTACGTCTTTGTATCTATATGACATGTCAAATCTGGAGATGTTGGACTGCACGGGGCTTCTACATCTCACATACCTGCAAGAATTAACCATAGAGAGTTGTCCTTTGCTGGAGATGTTGGACTGCACGGGGCTTCCTGTCTCTCTAATAAAATTAACAATGAGGGGATGTCCTTTGCTGGAAAATATGGTGGGAGAAAGGCTTCCTGACTCTCTAATAAAATTAACCATAGAGAGTTGTCCTTTGCTGGAAAAACGATGCCGCATGAAGCACCCTCAAATTTGGCCTAAAATTTGCCACATCCCTGGCATTTGGGTTGACTATAGATGGATTTAG 3783 0.4039 MAAALVGGAFLSAFLDVLFDRLASPEFVDLIRGKKFSKKLLQKLETTLRVVGAVLDDAEKKQITNTNVKHWLNDLKDAVYEADDLLDHVFTKAATQNKVRDLFSRFSDRKIVSKLEDIVVTLESHLKLKESLDLKESAVENLSWKAPSTSLEDGSHIYGREKDKEAIIKLLSEDNSDGSEVSVVPIVGMGGVGKTTLAQLVYNDENLKQKFNFDFKAWVCVSQEFDVLKVTKTIIEAVTGKPCKLNDLNLLHLELMDKLKDKKFLIVLDDVWTEDYVDWSLLKKPFNRGIRRSKILLTTRSEKTASIVQTVHTYHLNQLSNEDCWSVFANHACLSSESNKNTTTLEKIGKEIVKKCNGLPLAAQSLGGMLRRKHDIGDWNNILNNDIWDLSEGECKVIPALRLSYHYLPPHLKRCFVYCSLYPQDYEFDKNELILLWMAEDLLKKPRNGRTLEEVGHEYFDDLVSRSFFQRSSTNRSSWPFGKCFVMHDLMHDLATSLGGDFYFRSEELGKETKINTKTRHLSFTKFNSSVLDNSDDVGRTKFLRTFLSIINFEAAPFKNEEAQCIIVSKLMYLRVLSFRDFRSLDSLPDSIGKLIHLRYLDLSHSSVETLPKSLCNLYNLQTLKLFDCIKLTKLPSDMCNLVNLRRLDISWTPIKEMPRRMSKLNHLQHLDFFVVGKHQENGIKELGGLPNLRGQLEIRNLENVSQSDEALEARIMDKKHISSLRLKWSGCNNNSNNFQLEIDVLCKLQPQYNIESLDIKGYKGTRFPDWMGNSSYCNMISLKLRDCDNCSMLPSLGQLPSLKDLLISRLNRLKTIDEGFYKNEDCRSGMPFPSLESLFIYHMPCWEVWSSFNSEAFPVLKSLVIDDCPKLEGSLPNHLPALEILSIRNCELLVSSLPTGPAIRILEISKSNKVALNVFPLLVETIEVEGSPMVESMIEAITKIQPTCLRSLTLRDCSSAVSFPGGRLPESLNSLSIKDLKKLEFPTQHKHELLETLSIQSSCDSLTSLPLVTFPNLRDLETINCENMKYLLVSGAESFKSLCSLRIYQCPNLINFSVSGSDKLKSLPEEMSSLLPKLECLYISNCPEIESFPKRGMPPNLRKVEIGNCEKLLSGLAWPSMGMLTHLSVYGPCDGIKSFPKEGLLPPTLTSLYLYDMSNLEMLDCTGLLHLTYLQELTIESCPLLEMLDCTGLPVSLIKLTMRGCPLLENMVGERLPDSLIKLTIESCPLLEKRCRMKHPQIWPKICHIPGIWVDYRWI* 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0330 1260 Pfam NB-ARC domain 160 384 IPR002182 GO:0043531
Gso3g0330 1260 Coils Coil 41 61 - -
Gso3g0330 1260 Gene3D - 318 403 IPR042197 -
Gso3g0330 1260 SMART LRR_typ_2 800 824 IPR003591 -
Gso3g0330 1260 SMART LRR_typ_2 642 665 IPR003591 -
Gso3g0330 1260 SMART LRR_typ_2 595 618 IPR003591 -
Gso3g0330 1260 PANTHER OS05G0414200 PROTEIN 21 880 - -
Gso3g0330 1260 Gene3D Ribonuclease Inhibitor 546 948 IPR032675 -
Gso3g0330 1260 SUPERFAMILY L domain-like 486 897 - -
Gso3g0330 1260 PANTHER DISEASE RESISTANCE PROTEIN RP 21 880 IPR044974 GO:0006952
Gso3g0330 1260 SUPERFAMILY L domain-like 941 1237 - -
Gso3g0330 1260 Gene3D Ribonuclease Inhibitor 1025 1247 IPR032675 -
Gso3g0330 1260 PRINTS Disease resistance protein signature 183 198 - -
Gso3g0330 1260 PRINTS Disease resistance protein signature 258 272 - -
Gso3g0330 1260 PRINTS Disease resistance protein signature 356 370 - -
Gso3g0330 1260 PRINTS Disease resistance protein signature 878 894 - -
Gso3g0330 1260 Pfam Rx N-terminal domain 10 98 IPR041118 -
Gso3g0330 1260 Gene3D - 404 497 IPR036388 -
Gso3g0330 1260 Gene3D - 140 314 IPR027417 -
Gso3g0330 1260 Gene3D - 18 119 - -
Gso3g0330 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 419 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0330 Gso-Chr3 4985969 4990566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0330 585 673 WRKY Transcription Factor Family AT4G12020 40.000 4.76e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0330 - - gmx:100794060 2418.65