Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0314 ATGGCGCTTTCTCCGGAAACGTTTACAACCCGAAAACGACGCCCCCGAGGGTCGTCGTTTACGTCCCCGAAGGTAAACGACCTTAACGTGTTGAGCTCTTTGCTTCAACTAACGGATCAGATATGTTCCCTAAATCTCACAGCCACCCTCTTAAACCGTGTTTCCTCTTCCACCATCCGCAAAACGCAGCTCCTCGGCGTCGTTTTCGAGGAGCTCTTCCGCGTTTCGAATCTGAACTCCGATTCCGTTCTGTTCCTCTGCCTCGAGGAAATGTACATCGTTCTCCACAAGCTCAAAACCCTAATCCAAGATTTCTCCAACGGAAGCAAGTTCAATTTGCTCATGCAGATCGATACCGTCGCGGAGAGCTTCCACAGGCTCACCGGAGAACTCTCCACGCTCCTCGACGTGTTCCCTCTCCAAGACCTCGACCTCAACGACGACGTTAGGGAACTCGTTCTCCTCGTCAGAAAACAGTGCTCTGAAGCGAAGGCGTTCATCGGAGCCGAACATGTCAGCCTCCGCAACGACGTCGTTTTGGTCCTCGACCGGATCAAGAACGAGATCGTCCCCGACCAAGCGCATCTCGCTTCAATCTTCGAGAAATTGGAGATTCGCGACGCGTCGAGCTGCAGAGCGGAGATTGAGAGCCTCGAGGAAGAGATTCACAACCGTTGCGAAGAGCAACCGAAAACAGATCTCGTCGCGTTAATCGGCCTCGTCCGTTTCGCGAAGTGCGTTCTCTACGGCGCGTCAACGCCGTCGCAGAAAACCGTCACTCTGCGGCGGAACCAGTCGTCGGAGCTGGCGATTCCGGCGGATTACCGGTGTCCGATAAGCCTAGAGCTCATGCGCGATCCCGTCGTGGTGGCAACAGGACAAACATACGATCGTGTATCAATCAAGCTCTGGATGGATTCTGGACACAACACGTGTCCAAAAACGGGTCAAACGTTATCACACAGCGACCTAATCCCCAATCGCGTCCTGCGGAACATGATAACAGCGTGGTGCCGCGAGCAGAGAATCCCCTTCGAAGCAGAAACGGATACAGGGAAACTCAACGGTGGAGTTACCAACAAAGCCGCATTAGAAGCCACGCGAATGACGGTGTCGTTTTTGATCAACAAGCTCAAGGGAAGGGAAAACGATAACGTTAACGTTCCTTTGAGTGTTGAAGACACAAACGGCGTCGTTTACGAGCTTCGGGTGTTGGCTAAGACAGATTCGGATAGCCGAGCTTGTATAGCCGAAGCGGGAGCGATTCCGGTTTTGGTTCGGTTCCTTAATGCGGAGAATCCGAGCCTGCAGGTTAACGCCGTCACGACGATTTTGAACATGTCAATATTGGAAGCGAATAAGACTAAGATAATGGAGACTGACGGCGCGTTAAACGGCATCGCCGAGGTTTTGATATCGGGTGCCACGTGGGAGGCCAAGGCGAACGCGGCAGCGACGGTGTTTAGTTTGTCCGGTGTGGCGGCGCACAGAAAGAAGCTGGGGAGGAAGACACGTGTCGTGAGCGGGTTGGTGGGTTTGGCCAAGAGTGGGCCCGAGGGGGCGAGGAGGGACGCTCTGGCGGCGATATTGAACTTGGCGGCGGATAGGGAGACGGTGGCGAGGTTGGTGGAGGGGGGTGTGGTGGGGATCGCGGCCGAGGTGATGGCGGCGATGCCGGAGGAGGGGGTGACGATTCTGGAGGCAGTGGTGAAGAGGGGTGGGTTGGTGGCGGTGGCGGCGGCGTACGCCGGGATTAAGAGGCTGGGGGCAGTGCTGAGGGAGGGGTCGGAGAGGGCGAGGGAGAGCGCGGCGGCGACGCTGGTGACAATGTGTCGGAAAGGGGGGTCGGAGGTTGTGGCGGAGATGGCGGCGGTGCCCGGCGTGGAGAGGATCATTTGGGAGCTTATGGCGGTGGGAAGTGTCAGGGGGCGGCGGAAGGCGGCGACGCTGTTGAGGATTCTGCGGCGGTGGGCGGCGGGGCTCGACGGTGGCGAAAATGAAGGGTTCCCGACAACTACCACCATGGTTGCTTCCTCAACCACTACTGTGGTTGTTCCAACCACCACCACCACCACTTCGTTAGCACAGTAA 2091 0.5686 MALSPETFTTRKRRPRGSSFTSPKVNDLNVLSSLLQLTDQICSLNLTATLLNRVSSSTIRKTQLLGVVFEELFRVSNLNSDSVLFLCLEEMYIVLHKLKTLIQDFSNGSKFNLLMQIDTVAESFHRLTGELSTLLDVFPLQDLDLNDDVRELVLLVRKQCSEAKAFIGAEHVSLRNDVVLVLDRIKNEIVPDQAHLASIFEKLEIRDASSCRAEIESLEEEIHNRCEEQPKTDLVALIGLVRFAKCVLYGASTPSQKTVTLRRNQSSELAIPADYRCPISLELMRDPVVVATGQTYDRVSIKLWMDSGHNTCPKTGQTLSHSDLIPNRVLRNMITAWCREQRIPFEAETDTGKLNGGVTNKAALEATRMTVSFLINKLKGRENDNVNVPLSVEDTNGVVYELRVLAKTDSDSRACIAEAGAIPVLVRFLNAENPSLQVNAVTTILNMSILEANKTKIMETDGALNGIAEVLISGATWEAKANAAATVFSLSGVAAHRKKLGRKTRVVSGLVGLAKSGPEGARRDALAAILNLAADRETVARLVEGGVVGIAAEVMAAMPEEGVTILEAVVKRGGLVAVAAAYAGIKRLGAVLREGSERARESAAATLVTMCRKGGSEVVAEMAAVPGVERIIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGENEGFPTTTTMVASSTTTVVVPTTTTTTSLAQ* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0314 696 Gene3D - 391 661 IPR011989 -
Gso3g0314 696 CDD RING-Ubox_PUB 275 317 IPR045210 -
Gso3g0314 696 SUPERFAMILY RING/U-box 267 344 - -
Gso3g0314 696 Pfam U-box domain 271 342 IPR003613 GO:0004842|GO:0016567
Gso3g0314 696 PANTHER U BOX DOMAIN-CONTAINING 16 673 - -
Gso3g0314 696 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 420 462 IPR000225 GO:0005515
Gso3g0314 696 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 16 673 - -
Gso3g0314 696 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Gso3g0314 696 Pfam Armadillo/beta-catenin-like repeat 410 448 IPR000225 GO:0005515
Gso3g0314 696 MobiDBLite consensus disorder prediction 1 21 - -
Gso3g0314 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 349 IPR013083 -
Gso3g0314 696 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Gso3g0314 696 SUPERFAMILY ARM repeat 396 654 IPR016024 -
Gso3g0314 696 SMART arm_5 494 534 IPR000225 GO:0005515
Gso3g0314 696 SMART arm_5 409 449 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0314 Gso-Chr3 4703391 4705933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0314 11 689 U-box Gene Family AT5G01830 55.848 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0314 - - gmx:100805405 1243.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0314 3 4703391 4705933 Gso3g0314 3 4703391 4705933 ECH
Gso1g1116 1 45342160 45344658 Gso3g0314 3 4703391 4705933 GST