Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0313 ATGGGGAATCACAGGTTTAAGTTATCAGATATGATTCCAAATGCTTGGTTTTACAAGCTGAGGGACATGGGTAAAGGAAGAGATTCAAGAAAGCAAAACACAACACCCTCTAGGAAAAAGAAGCAAACTTCACCCCCTTCAACCACACATTCATCAATACGAAACCAACCCCACCAACAAAACAACAACAACCCCAGAAAATCCTACTATTTCACAAGAGACCTCAAAATCTCACCCTCAAACACCCCAAAAACTATTTCCCCTCCTAGAAAATCAACCAAACAAAGAACCAAAAAAAGAACACCAACAAGAACACCAAAACTTGTCTCCTCCTCAGGTTGTAGCTGCCGCACCACCCTTGAATCCATGTGGACCAAATCAGATTCACCACAAGATGAACACTCTTCCTCATCCCCATTTGACACCTCTCCCGAGTCACAATCCCCAGAATTCAGAACAGACCGTGTTCTTCTCCCATTTTCTTCATCATTCGATGAAATGGTGTCCTTGTCCACCACCTCTTGCGCCTCTTGCAGACTCAACACAAACAAAAACAAAAACAACACCACCAACGACACCATCATAGACGTGGACAAAAACTCCATTGCAAGAAAAGATAACAAGCTTGATGGCTACTACAATTACAACACCAACAATGGCTATGATGACACCTTCTCAGAGCTTGAGCTTCCTCCAATCATAACCAAGCCATCATCCAAGTTACTAAAGAAGAGAGAACTCAAACAAGGGTCCTTGAAGGTGAGAATTGTGAAGGAACAAGACTCTGCAATGAAGGAACAGAGGAACCATCATGGTTCTTTGAGGAGGCTATCTGTGAGTTCTCCAGGGGTGAGGTTGAGGATCCACTCGCCGAGAATCGCCGGCAGGAGGGGCCGGAAAAGCGTGTCATCGTCATCGACGACGACAAGTTCCGGCTCCCGGAGAAGCCTCTCCGAGAGCTTTGCGGTTGTGAAATCATCCTTTGACCCACAAAAGGACTTCATGGAGTCCATGGTGGAGATGATTGTGGAGAACAACATAAGGGCATCCAAGGACTTGGAAGATCTACTTGCTTGCTACCTTTCTCTCAATTCAGATGAGTATCATGACCTCATCATCAAAGTGTTCAAGCAAATTTGGTTTGATTTGACTCAACCAAGGTAG 1164 0.4476 MGNHRFKLSDMIPNAWFYKLRDMGKGRDSRKQNTTPSRKKKQTSPPSTTHSSIRNQPHQQNNNNPRKSYYFTRDLKISPSNTPKTISPPRKSTKQRTKKRTPTRTPKLVSSSGCSCRTTLESMWTKSDSPQDEHSSSSPFDTSPESQSPEFRTDRVLLPFSSSFDEMVSLSTTSCASCRLNTNKNKNNTTNDTIIDVDKNSIARKDNKLDGYYNYNTNNGYDDTFSELELPPIITKPSSKLLKKRELKQGSLKVRIVKEQDSAMKEQRNHHGSLRRLSVSSPGVRLRIHSPRIAGRRGRKSVSSSSTTTSSGSRRSLSESFAVVKSSFDPQKDFMESMVEMIVENNIRASKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTQPR* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0313 387 MobiDBLite consensus disorder prediction 288 313 - -
Gso3g0313 387 Pfam DNA-binding domain 1 45 IPR025830 GO:0003677
Gso3g0313 387 Pfam Transcriptional repressor, ovate 327 383 IPR006458 -
Gso3g0313 387 MobiDBLite consensus disorder prediction 299 313 - -
Gso3g0313 387 MobiDBLite consensus disorder prediction 104 150 - -
Gso3g0313 387 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 321 384 IPR006458 -
Gso3g0313 387 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 385 IPR038933 GO:0045892
Gso3g0313 387 MobiDBLite consensus disorder prediction 38 90 - -
Gso3g0313 387 ProSiteProfiles OVATE domain profile. 323 382 IPR006458 -
Gso3g0313 387 PANTHER TRANSCRIPTION REPRESSOR OFP1-LIKE 3 385 - -
Gso3g0313 387 MobiDBLite consensus disorder prediction 23 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0313 Gso-Chr3 4695841 4697485 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Gso3g0313 Ovate 2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0313 - - gmx:100803805 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0313 3 4695841 4697485 Gso3g0313 3 4695841 4697485 ECH
Gso1g1118 1 45357284 45359170 Gso3g0313 3 4695841 4697485 GST