Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0312 ATGTACAAGGGGAGATTTGGAGGCAAGGCTGAGCTTGGATATGTTGAAACTGACCCTTCAGGTCGATATGGACGTTTCAGGGACATTCTAGGCAAAGGAGCAGTGAAGGTAGTGTATAGGGCATTTGATGAGGTGCTAGGAAGAGAAGTGGCTTGGAACCAAGTCAAGCTTGGTGATGTGTTTCATTCACCAGATCTACTTCCGAGGCTTTATTCAGAGGTTCATCTCCTCAAGAACTTGGAACATGACTCTATCATGACCTTCCATGATTCTTGGATTGATGTCCATTGTAGAACCTTCAACTTCATCACCGAATTGTTCACCTCTGGCACCCTAAGAGAGTATAGAAAGAAGTACCAGCGAGTAGATATAAGAGCAGTGAAGAATTGGGCACGCCAGATTCTAAGTGGCTTGGAGTATTTGCACAGCCATGATCCTCCTGTCATACATAGAGACCTCAAGTGTGACAATATCTTCATCAATGGCCATTTGGGGCAGGTCAAAATTGGTGACTTGGGCCTTGCAGCCATTCTCCGTGGCTCCCAACATGCACACAGTGTCATAGGTACACCAGAATTTATGGCACCAGAGTTGTATGAAGAGGAATACAATGAGTTGGTAGACATATACTCCTTTGGGATGTGCATGATTGAAATTTTTACTTCTGAGTTCCCATACAGCGAGTGCTCCAACCCTGCTCAGATATACAAGAAAGTTACTTCGGGGAAGCTGCCAGAAGCGTATTACAGAATCCATGACTTGGAAGCCCAAAAATTTGTGGGAAAATGTTTGGCAAATGTCTCAGAGAGGTTGTCAGCAAAGGAGCTCTTGTTGGATCCATTTTTAGCCACGGAACAACTAGACTCTCCACTTCCTAGCCCAACATTACCCAAAAAACAAACCCCCACACTCAATTTCACTGCATTACTAGCCAAAGAGCTACCTCCACCAAAGAGTAACCAAACAAAGGACACACACATGACAATCACTGGATCAATGAATGAAGAGAATGACACAGTTTTCCTTAAAGTACAAATTTCTAACAAAAATGGGCAAAAGAGAAACATATTCTTTCCATTCGATACCATAAACGACACTGCCATTGATGTGGCAATGGAGATGGTTAAAGAACTGGAGATTAGTGACTTGGAACCATTGGAGATTGCTGAAATGATTGAGGAAGAGATATCAGCTTTGGTCCCAACATGGAGGGACTGGGGCAGTGCTAAGTATCAAAAACAGCATAGTTTTAGCTATGAAGAAGAATATGATATGAGTAACCACCACCCTTTCTTCTCACCAACTTCTCGTTCTTCCTCTCATGCTTCACTTCCAGTTTTTGGTTCTTCTTCCTACAAGAATAGTTCCCACCATCGTGAGAATCATTACCCTTTTGCTCAAGATTGGCCTCAAGATGAACTATTCATGAATGATGATGCGAGCTCACAAAGCTCAATGAACTCCTTCAAGTGTTTCAATCTCAATTGCTGCGACCCCGGCAATGAAGATGAGCATGATCCAACTCTAGCACTAGGAGCAGAACACCTTTTCTACACACCAAAAGGCAATGAAAAGTACACAAGATTTTGTCCTAGAGAAGAAGTGATGGAATCTGATTTCACCAAACAGTTTTGCAACATGAGAATGGATTCTCACAGGTGTCATGGAATGCACAGGCTAACCAGGATCCGTTCCTTCGTCGATCTGAGGAGACAGCAACAGCAACGATCACTGGTGGAAGAGATTCACAAGAGGAGGATGTTCAAGACGGTTGGTGCCATTGAGAACATTGGATTTCAGGATCCAGAAGGAGATGGATGTTTTTCTTACTGA 1833 0.4326 MYKGRFGGKAELGYVETDPSGRYGRFRDILGKGAVKVVYRAFDEVLGREVAWNQVKLGDVFHSPDLLPRLYSEVHLLKNLEHDSIMTFHDSWIDVHCRTFNFITELFTSGTLREYRKKYQRVDIRAVKNWARQILSGLEYLHSHDPPVIHRDLKCDNIFINGHLGQVKIGDLGLAAILRGSQHAHSVIGTPEFMAPELYEEEYNELVDIYSFGMCMIEIFTSEFPYSECSNPAQIYKKVTSGKLPEAYYRIHDLEAQKFVGKCLANVSERLSAKELLLDPFLATEQLDSPLPSPTLPKKQTPTLNFTALLAKELPPPKSNQTKDTHMTITGSMNEENDTVFLKVQISNKNGQKRNIFFPFDTINDTAIDVAMEMVKELEISDLEPLEIAEMIEEEISALVPTWRDWGSAKYQKQHSFSYEEEYDMSNHHPFFSPTSRSSSHASLPVFGSSSYKNSSHHRENHYPFAQDWPQDELFMNDDASSQSSMNSFKCFNLNCCDPGNEDEHDPTLALGAEHLFYTPKGNEKYTRFCPREEVMESDFTKQFCNMRMDSHRCHGMHRLTRIRSFVDLRRQQQQRSLVEEIHKRRMFKTVGAIENIGFQDPEGDGCFSY* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0312 610 CDD STKc_WNK 22 282 - -
Gso3g0312 610 Gene3D Transferase(Phosphotransferase) domain 1 107 288 - -
Gso3g0312 610 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK5-RELATED 8 602 - -
Gso3g0312 610 ProSiteProfiles Protein kinase domain profile. 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0312 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Gso3g0312 610 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 8 602 - -
Gso3g0312 610 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0312 610 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Gso3g0312 610 SUPERFAMILY Protein kinase-like (PK-like) 26 283 IPR011009 -
Gso3g0312 610 SMART serkin_6 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0312 Gso-Chr3 4664590 4670893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0312 12 424 MAP Kinase Kinase Kinase AT3G51630 67.548 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gso3g0312 Pkinase 7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0312 K08867 - gmx:100170673 1240.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0312 3 4664590 4670893 Gso3g0312 3 4664590 4670893 ECH
Gso1g1120 1 45403606 45410734 Gso3g0312 3 4664590 4670893 GST
Gso9g2281 9 47039878 47044808 Gso3g0312 3 4664590 4670893 PCT
Gso3g0312 3 4664590 4670893 Gso9g2281 9 47039878 47044808 PCT