Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0309 ATGAGTTACAGAGAAAGGAACAAAGGGAAGGGAGAAGAGAAGGAATATGAGAACAGTACTACTGTGGGATTGGATTCAAAATCAGTGAGTCACAACAATGGTTCAATAGAAGAGGAGCTGCTAACAATTGATGAGAATCTTCTGATTGACCCCAAACTGTTGTTTATTGGGTCAAAAATTGGAGAGGGAGCTCATGGGAGGGTTTATGAAGGAAGGTATAGAGATCGGATTGTTGCGATTAAAGTTCTGCATCGTGGGGGTACGTTGGAAGAAAAAGTTGCCCTTGAGAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTGGTGAAGTTTATTGGAGCTTGTAAGGCTCCTCTCATGGTGATTGTTACAGAGATGTTACCTGGGTTGTCCCTGCGAAAATATCTAACCACCATACGCCCTAAGCAATTGGACCCTTATGTGGCTATAAAGTTTTCCCTTGATGTTGCTCGAGCCATGGATTGGTTACATGCCAATGGGATCATACATAGAGATCTGAAACCTGACAATCTGCTTCTCACAGAAAACCAGAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACGGCAGAGACTGGAACTTACCGTTGGATGGCACCTGAGTTGTACAGTACCGTGACATTGCGTCAAGGTGAGAAAAAGCATTACAACAATAAGGTTGATGTCTATAGCTTTGGAATTGTGTTGTGGGAGCTACTTACAAACCGCATGCCTTTTGAAGGGATGTCGAATTTACAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCTAACCTTCCTGATGATATTTCTCCTGATCTTGCCTTTATCATACAATCATGCTGGGTTGAAGATCCTAACATGAGACCAAGCTTCAGTCAGATTATTCGCTTACTCAATGAGTTTCTCTTCACACTCCAACAACCATCCCCTTCGTTGCAGCCAGAACCTGAGAACAAACCTGAGGCTGTAACAAGTAACGGTACCATAACTGACTTTTCTACCCGAAATAAGGTAAAGTTTTCGTTTATTCGGCACTTGTTTTCTTCCAAGAGGACCAAAAGCTAA 1116 0.4265 MSYRERNKGKGEEKEYENSTTVGLDSKSVSHNNGSIEEELLTIDENLLIDPKLLFIGSKIGEGAHGRVYEGRYRDRIVAIKVLHRGGTLEEKVALENRFAREVNMMSRVHHENLVKFIGACKAPLMVIVTEMLPGLSLRKYLTTIRPKQLDPYVAIKFSLDVARAMDWLHANGIIHRDLKPDNLLLTENQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPNLPDDISPDLAFIIQSCWVEDPNMRPSFSQIIRLLNEFLFTLQQPSPSLQPEPENKPEAVTSNGTITDFSTRNKVKFSFIRHLFSSKRTKS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0309 371 CDD STKc_MAP3K-like 60 315 - -
Gso3g0309 371 SMART serkin_6 54 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0309 371 ProSiteProfiles Protein kinase domain profile. 54 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0309 371 MobiDBLite consensus disorder prediction 1 30 - -
Gso3g0309 371 MobiDBLite consensus disorder prediction 1 20 - -
Gso3g0309 371 SUPERFAMILY Protein kinase-like (PK-like) 52 334 IPR011009 -
Gso3g0309 371 ProSitePatterns Protein kinases ATP-binding region signature. 60 81 IPR017441 GO:0005524
Gso3g0309 371 PRINTS Tyrosine kinase catalytic domain signature 130 143 IPR001245 GO:0004672|GO:0006468
Gso3g0309 371 PRINTS Tyrosine kinase catalytic domain signature 168 186 IPR001245 GO:0004672|GO:0006468
Gso3g0309 371 PRINTS Tyrosine kinase catalytic domain signature 242 264 IPR001245 GO:0004672|GO:0006468
Gso3g0309 371 PRINTS Tyrosine kinase catalytic domain signature 286 308 IPR001245 GO:0004672|GO:0006468
Gso3g0309 371 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 25 343 - -
Gso3g0309 371 PANTHER SERINE-THREONINE PROTEIN KINASE 25 343 - -
Gso3g0309 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Gso3g0309 371 MobiDBLite consensus disorder prediction 326 345 - -
Gso3g0309 371 Gene3D Phosphorylase Kinase; domain 1 43 133 - -
Gso3g0309 371 Pfam Protein tyrosine and serine/threonine kinase 56 315 IPR001245 GO:0004672|GO:0006468
Gso3g0309 371 Gene3D Transferase(Phosphotransferase) domain 1 137 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0309 Gso-Chr3 4600291 4605545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0309 42 368 MAP Kinase Kinase Kinase AT5G01850 72.365 1.32e-178 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso3g0309 PK_Tyr_Ser-Thr 5.6e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0309 - - gmx:100816708 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0309 3 4600291 4605545 Gso3g0309 3 4600291 4605545 ECH
Gso1g1122 1 45576420 45581844 Gso3g0309 3 4600291 4605545 GST
Gso9g2278 9 47007557 47012046 Gso3g0309 3 4600291 4605545 PCT
Gso3g0309 3 4600291 4605545 Gso9g2278 9 47007557 47012046 PCT