Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0307 ATGAACACTATTGTGTTAACAATGCTGCCATTTTTTCTCTTCCTGTTAGTTTGGCTTCCTAGGGTTACCTGTGGCTGGACGGCTGCACATGCCACATTCTATGGTGGTGCAGATGCTTCAGGGACCATGGGGGGAGCATGCGGCTACGGGAACTTGTATCAGCAAGGGTATGGAACCAGTACAGCAGCATTAAGCGCTGCACTTTTCAACAATGGACAAACTTGTGGGGCGTGTTTCCAACTTGTTTGCTACAATTCCCCATTCTGCATTCGTGGTGCTGGCCCTATAACCATAACCGCCACAAACTTTTGTCCCCGTAATGGCTCCTTTTCTGCCAACGGTATTGGCTGGTGCAATCCCCCATTGATGCATTTTGATATGTCACAACCAGCTTTCACCAAGATCGCCCTTTATCGAGCTGGAGTCGTTCCTGTGCTCTTTAGAAGGGTGGTGTGTCTGAAGAGGGGAGGCATAAGGTTCACCATAAACGGCAACCCATACTTCAACTTGGTGTTGGTGTACAACGTGGGAGGGTTAGGAGATGTGAAGGCAGTGTCAATAAAAGGGTCATCAACTGGGTGGCAACCAATGACCAGAAACTGGGGGCAAAATTGGCAGAGCAAGACATATTTCGTTGGCCAAAGCCTCTCCTTTATAGTCACAACCAGCGATGGTAGATCTGTGGTCAGTTCTAATGTGGTACCTGCTGGTTGGAAATTCGGACAAACCTTCCAAGGTGGTCAATTTTGA 750 0.4827 MNTIVLTMLPFFLFLLVWLPRVTCGWTAAHATFYGGADASGTMGGACGYGNLYQQGYGTSTAALSAALFNNGQTCGACFQLVCYNSPFCIRGAGPITITATNFCPRNGSFSANGIGWCNPPLMHFDMSQPAFTKIALYRAGVVPVLFRRVVCLKRGGIRFTINGNPYFNLVLVYNVGGLGDVKAVSIKGSSTGWQPMTRNWGQNWQSKTYFVGQSLSFIVTTSDGRSVVSSNVVPAGWKFGQTFQGGQF* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0307 249 PANTHER EXPANSIN-A15 12 249 IPR002963 GO:0009664
Gso3g0307 249 PANTHER EXPANSIN 12 249 - -
Gso3g0307 249 SMART dpbb_1 61 147 IPR007112 -
Gso3g0307 249 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Gso3g0307 249 Gene3D - 157 249 IPR036749 -
Gso3g0307 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Gso3g0307 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Gso3g0307 249 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Gso3g0307 249 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Gso3g0307 249 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Gso3g0307 249 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Gso3g0307 249 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Gso3g0307 249 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Gso3g0307 249 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Gso3g0307 249 Pfam Lytic transglycolase 61 146 IPR009009 -
Gso3g0307 249 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Gso3g0307 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 157 IPR007112 -
Gso3g0307 249 Gene3D - 20 152 IPR036908 -
Gso3g0307 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Gso3g0307 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Gso3g0307 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Gso3g0307 249 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Gso3g0307 249 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Gso3g0307 249 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Gso3g0307 249 SUPERFAMILY Barwin-like endoglucanases 14 175 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0307 Gso-Chr3 4581459 4585179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0307 25 249 Expansin Gene Family AT5G05290 69.604 1.97e-113 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0307 - - gmx:100797425 517.694