Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0303 ATGGAGTCAAGGAGCTGCATGAACGTGGCGTGCGCCACCTCGACGACGATTCGGTGGCGCAAAGGCTGGGCCCTGCGATCCGGCGAATTCGCCGATCTCTGCGATAAGTGCGGTTCTGCTTATGAGCAATCAACGTATTGTGATATGTTTCACTCAAATGATTCTGGTTGGAGAGAATGCACATCATGTGACAAGCGTCTCCATTGTGGATGCATTGCTTCTATGTCTCAGCTTGAATTATTAGATACTGGTGGTGTAAGCTGTATAAGCTGTGCAAGGAATTCAGGACTGCAACCTATTGCAAACAATGAAAAGCCTAATGGATCCGGGACATCAAAAGTACAAAATGTCAGTACACAGCAGCAGTACACATCTCTGGCTAACCAATTAACTGTGAGGGGTATGCAAGTAGGGCATTATGCAGAGAATGATGGGCTTCGGTGCTGGTTCAAACCTCATAATGTTGAAACAGATGGGCCTTCTGCAGAAATGAAACCAGAAATTTTACCTTCAGTTGGAGAACTTGGAAACACTTTGATATCACAATTTCATTGTGAGTCTAATGGATCATCTAAGGCTTCCAAAGCAGAGAACTGTAAGGCAGAGACAGAAATGCGAGATATATATGAATCATTGGCACAGACAAATTTGAGTATGACCCTTGCTGCTCCTTTAGGAAATTCAAATCCCTTTCATAGTGCTGTTGTTGATGAAAGGGAACAAAGTAAAACATCTCCACTTTTATTGGGGTCAAGGTCTCGTCATCTTTTACCTAAGCCCCCAAGGTCAACTATTGGGACAAGCTTAGAAGCAAATGCTGGCATGGTATCCCAGATTCGTGTGGCAAGACCACCTGCTGAAGGACGGGGAAGGAATCAATTGCTTCCACGTTATTGGCCTAGGATTACCGATCAAGAGTTGCAACAAATATCAGGAGATTCAAATTCTACGATTGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAGTTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAAGGCAACAAATTCTACTGCAGTACAGGAAACACTACCATCTAATATGCCCAACGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGATGTTCAGAAACCCACCTAAATGCGCTGTCTAAGAAATGGAACTCAGCTGGTGGTGACATGAATTGGCATAACATTGACATGCCTGAAAGCAGAAAAAGAGATGGGTTGCCGTTGCCACCTGTGATGGTTCCCGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATCGATAGCCAGGATGCGCTGGAGCTGAAACTTACTTGGGAAGAGGCTCAAGATTTGCTCCGTCCTCCTCCAACTGTTAAGCCAAGCATTGTCATGATTGAGGATCATGTATTTGAAGAATATGAAGAACCTCCTGTCTTTGGAAAGAGGAGTATATTCGTAGTTCGATCAACTGGGGTAAACGAGCAGTGGATGCAGTGTGATAGTTGCTCAAAATGGCGGAAGTTGCCTGTTGATGCACTTATTCCCCCAAAGTGGACATGTGTGGAGAATTTATGGGATCAGAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATAATCTTCTGAGGCTGAATAAAGAATTCAAGAAACAAAGACTGACAGCAAGCCAGAGACCGGCCCTGGAACGTGAATCTTCAGGACTGGATGCTTTGGCAAATGCAGCAATACTGGGAGATGATGCAAGTGACTCTGGCAGAACACCAGTTGTTACCACCACAAAACATCCTCGGCATAGACCTGGGTGCTCTTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACCTGCAATGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAGCGGCAATCCGAACGTGAAGCAGAGATTGCTCAGAGAAATCAGTTATCATGGCGGACGAAAGATGAATCAGAAGTAGATAGCACCTCTCGCCATTTAACTCCGGTTGACGGTTTGGAGAATGAAGTAAGGGTGCAAAATGAATTAGATTCAAGGAGTCCAGACGATGCGGTGGCTGAAGCTGCCAAGGGACAATTAGACTTGAATTGCCAACCTGATCGAGAAGATGTGCAAGCTGGGCCGAACAGCTTGAGCATGACGAGTCTTCTTGAAGAAGCAAATCTCCCGCTGGAGACCTACCTGAAGCAAAATGGCCTTACTAGCTTGATAACAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAATGATAGTGAGGTGAAACACAATGAGGATTGCGGAACCGCTTCGGTTATTCATGCGCAGGAAAGCAGTCCTGAAGAGAACAGTGGGCAAGATAAAGAGCAAAACAATTAA 2718 0.4463 MESRSCMNVACATSTTIRWRKGWALRSGEFADLCDKCGSAYEQSTYCDMFHSNDSGWRECTSCDKRLHCGCIASMSQLELLDTGGVSCISCARNSGLQPIANNEKPNGSGTSKVQNVSTQQQYTSLANQLTVRGMQVGHYAENDGLRCWFKPHNVETDGPSAEMKPEILPSVGELGNTLISQFHCESNGSSKASKAENCKAETEMRDIYESLAQTNLSMTLAAPLGNSNPFHSAVVDEREQSKTSPLLLGSRSRHLLPKPPRSTIGTSLEANAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTAVQETLPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSETHLNALSKKWNSAGGDMNWHNIDMPESRKRDGLPLPPVMVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTVKPSIVMIEDHVFEEYEEPPVFGKRSIFVVRSTGVNEQWMQCDSCSKWRKLPVDALIPPKWTCVENLWDQSRCSCAAPNELNPRELDNLLRLNKEFKKQRLTASQRPALERESSGLDALANAAILGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLSWRTKDESEVDSTSRHLTPVDGLENEVRVQNELDSRSPDDAVAEAAKGQLDLNCQPDREDVQAGPNSLSMTSLLEEANLPLETYLKQNGLTSLITEQQTNSASNVQAQTTNDSEVKHNEDCGTASVIHAQESSPEENSGQDKEQNN* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0303 905 MobiDBLite consensus disorder prediction 741 775 - -
Gso3g0303 905 SMART B3_2 322 422 IPR003340 GO:0003677
Gso3g0303 905 Pfam B3 DNA binding domain 322 421 IPR003340 GO:0003677
Gso3g0303 905 Gene3D - 300 427 IPR015300 -
Gso3g0303 905 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 860 - -
Gso3g0303 905 SUPERFAMILY DNA-binding pseudobarrel domain 319 422 IPR015300 -
Gso3g0303 905 CDD B3_DNA 320 421 IPR003340 GO:0003677
Gso3g0303 905 MobiDBLite consensus disorder prediction 856 905 - -
Gso3g0303 905 Pfam CW-type Zinc Finger 592 634 IPR011124 GO:0008270
Gso3g0303 905 MobiDBLite consensus disorder prediction 759 773 - -
Gso3g0303 905 Gene3D - 590 646 - -
Gso3g0303 905 MobiDBLite consensus disorder prediction 856 871 - -
Gso3g0303 905 ProSiteProfiles B3 DNA-binding domain profile. 322 423 IPR003340 GO:0003677
Gso3g0303 905 ProSiteProfiles Zinc finger CW-type profile. 587 637 IPR011124 GO:0008270
Gso3g0303 905 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0303 Gso-Chr3 4529913 4538383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0303 1 859 B3 DNA Binding Superfamily AT4G32010 50.808 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso3g0303 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0303 - - gmx:100778833 1841.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0303 3 4529913 4538383 Gso3g0303 3 4529913 4538383 ECH
Gso1g1130 1 45757484 45765495 Gso3g0303 3 4529913 4538383 GST