LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g0303	ATGGAGTCAAGGAGCTGCATGAACGTGGCGTGCGCCACCTCGACGACGATTCGGTGGCGCAAAGGCTGGGCCCTGCGATCCGGCGAATTCGCCGATCTCTGCGATAAGTGCGGTTCTGCTTATGAGCAATCAACGTATTGTGATATGTTTCACTCAAATGATTCTGGTTGGAGAGAATGCACATCATGTGACAAGCGTCTCCATTGTGGATGCATTGCTTCTATGTCTCAGCTTGAATTATTAGATACTGGTGGTGTAAGCTGTATAAGCTGTGCAAGGAATTCAGGACTGCAACCTATTGCAAACAATGAAAAGCCTAATGGATCCGGGACATCAAAAGTACAAAATGTCAGTACACAGCAGCAGTACACATCTCTGGCTAACCAATTAACTGTGAGGGGTATGCAAGTAGGGCATTATGCAGAGAATGATGGGCTTCGGTGCTGGTTCAAACCTCATAATGTTGAAACAGATGGGCCTTCTGCAGAAATGAAACCAGAAATTTTACCTTCAGTTGGAGAACTTGGAAACACTTTGATATCACAATTTCATTGTGAGTCTAATGGATCATCTAAGGCTTCCAAAGCAGAGAACTGTAAGGCAGAGACAGAAATGCGAGATATATATGAATCATTGGCACAGACAAATTTGAGTATGACCCTTGCTGCTCCTTTAGGAAATTCAAATCCCTTTCATAGTGCTGTTGTTGATGAAAGGGAACAAAGTAAAACATCTCCACTTTTATTGGGGTCAAGGTCTCGTCATCTTTTACCTAAGCCCCCAAGGTCAACTATTGGGACAAGCTTAGAAGCAAATGCTGGCATGGTATCCCAGATTCGTGTGGCAAGACCACCTGCTGAAGGACGGGGAAGGAATCAATTGCTTCCACGTTATTGGCCTAGGATTACCGATCAAGAGTTGCAACAAATATCAGGAGATTCAAATTCTACGATTGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCAATCTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAGTTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAAGGCAACAAATTCTACTGCAGTACAGGAAACACTACCATCTAATATGCCCAACGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGATGTTCAGAAACCCACCTAAATGCGCTGTCTAAGAAATGGAACTCAGCTGGTGGTGACATGAATTGGCATAACATTGACATGCCTGAAAGCAGAAAAAGAGATGGGTTGCCGTTGCCACCTGTGATGGTTCCCGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATCGATAGCCAGGATGCGCTGGAGCTGAAACTTACTTGGGAAGAGGCTCAAGATTTGCTCCGTCCTCCTCCAACTGTTAAGCCAAGCATTGTCATGATTGAGGATCATGTATTTGAAGAATATGAAGAACCTCCTGTCTTTGGAAAGAGGAGTATATTCGTAGTTCGATCAACTGGGGTAAACGAGCAGTGGATGCAGTGTGATAGTTGCTCAAAATGGCGGAAGTTGCCTGTTGATGCACTTATTCCCCCAAAGTGGACATGTGTGGAGAATTTATGGGATCAGAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATAATCTTCTGAGGCTGAATAAAGAATTCAAGAAACAAAGACTGACAGCAAGCCAGAGACCGGCCCTGGAACGTGAATCTTCAGGACTGGATGCTTTGGCAAATGCAGCAATACTGGGAGATGATGCAAGTGACTCTGGCAGAACACCAGTTGTTACCACCACAAAACATCCTCGGCATAGACCTGGGTGCTCTTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACCTGCAATGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAGCGGCAATCCGAACGTGAAGCAGAGATTGCTCAGAGAAATCAGTTATCATGGCGGACGAAAGATGAATCAGAAGTAGATAGCACCTCTCGCCATTTAACTCCGGTTGACGGTTTGGAGAATGAAGTAAGGGTGCAAAATGAATTAGATTCAAGGAGTCCAGACGATGCGGTGGCTGAAGCTGCCAAGGGACAATTAGACTTGAATTGCCAACCTGATCGAGAAGATGTGCAAGCTGGGCCGAACAGCTTGAGCATGACGAGTCTTCTTGAAGAAGCAAATCTCCCGCTGGAGACCTACCTGAAGCAAAATGGCCTTACTAGCTTGATAACAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAATGATAGTGAGGTGAAACACAATGAGGATTGCGGAACCGCTTCGGTTATTCATGCGCAGGAAAGCAGTCCTGAAGAGAACAGTGGGCAAGATAAAGAGCAAAACAATTAA	2718	0.4463	MESRSCMNVACATSTTIRWRKGWALRSGEFADLCDKCGSAYEQSTYCDMFHSNDSGWRECTSCDKRLHCGCIASMSQLELLDTGGVSCISCARNSGLQPIANNEKPNGSGTSKVQNVSTQQQYTSLANQLTVRGMQVGHYAENDGLRCWFKPHNVETDGPSAEMKPEILPSVGELGNTLISQFHCESNGSSKASKAENCKAETEMRDIYESLAQTNLSMTLAAPLGNSNPFHSAVVDEREQSKTSPLLLGSRSRHLLPKPPRSTIGTSLEANAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTAVQETLPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSETHLNALSKKWNSAGGDMNWHNIDMPESRKRDGLPLPPVMVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTVKPSIVMIEDHVFEEYEEPPVFGKRSIFVVRSTGVNEQWMQCDSCSKWRKLPVDALIPPKWTCVENLWDQSRCSCAAPNELNPRELDNLLRLNKEFKKQRLTASQRPALERESSGLDALANAAILGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLSWRTKDESEVDSTSRHLTPVDGLENEVRVQNELDSRSPDDAVAEAAKGQLDLNCQPDREDVQAGPNSLSMTSLLEEANLPLETYLKQNGLTSLITEQQTNSASNVQAQTTNDSEVKHNEDCGTASVIHAQESSPEENSGQDKEQNN*	906

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g0303	905	MobiDBLite	consensus disorder prediction	741	775	-	-
	Gso3g0303	905	SMART	B3_2	322	422	IPR003340	GO:0003677
	Gso3g0303	905	Pfam	B3 DNA binding domain	322	421	IPR003340	GO:0003677
	Gso3g0303	905	Gene3D	-	300	427	IPR015300	-
	Gso3g0303	905	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS07G0563300	3	860	-	-
	Gso3g0303	905	SUPERFAMILY	DNA-binding pseudobarrel domain	319	422	IPR015300	-
	Gso3g0303	905	CDD	B3_DNA	320	421	IPR003340	GO:0003677
	Gso3g0303	905	MobiDBLite	consensus disorder prediction	856	905	-	-
	Gso3g0303	905	Pfam	CW-type Zinc Finger	592	634	IPR011124	GO:0008270
	Gso3g0303	905	MobiDBLite	consensus disorder prediction	759	773	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g0303	Gso-Chr3	4529913	4538383	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g0303	1	859	B3 DNA Binding Superfamily	AT4G32010	50.808	0.0	809

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Gso3g0303		B3	1.4e-15	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g0303	-		-	gmx:100778833	1841.62

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso3g0303	3	4529913	4538383	Gso3g0303	3	4529913	4538383	ECH
	Gso1g1130	1	45757484	45765495	Gso3g0303	3	4529913	4538383	GST

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