Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0287 ATGGCTGCAGCACTGGTAGGTGGTGCCTTTCTCTCTGCTTTCCTTGATGTGCTTTTCGACAGGCTGGCTTCACCTGACTTTGTTGACCTGATCCGTGGAAAGAAGCTTAGCAAGAAGTTGCTTCAAAAGTTGGAGACCACTCTCAGAGTGGTTGGAGCTGTGCTTGATGATGCCGAGAAGAAACAGATCACAGACACCAATGTCAAACACTGGCTCAATGCTCTCAAAGATGCTGTCTATGAAGCCGATGACTTACTCGACCATGTTTTCACCAAAGCTGCCACCCAAAACAAGGTAAGAGACTTGTTTTCTCGCTTTTCCGATAGCAAGATCGTTAGTAAGTTGGAAGACATAGTTGTCACACTTGAGTCTCATTTAAAACTCAAGGAGAGTCTTGATTTGAAAGAGAGTGCAGTGGAGAACTTGTCATGGAAAGCTCCATCAACATCTCTGGAAGATGGATCTCATATATATGGTAGGGAGAAAGATAAGGAGGCCATAATCAAGTTGTTGTTGGAGGATAACAGTGACGGTAGAGAAGTGTCTGTGGTTCCTATTGTGGGCATGGGTGGGGTTGGAAAAACTACTTTGGTCCAATTGGTGTACAATGATGAGAATTTGAAACAGATATTTGATTTTGATTTTAAGGCATGGGTTTGTGTTTCTCAAGAATTTGATGTTCTCAAGGTCACAAAAACTATAATAGAGGCGGTGACTGGAAAGGCTTGTAAATTGAATGATCTGAATCTACTTCATCTTGAATTGATGGACAAGCTGAAAGATAAAAAATTCTTAATTGTTTTGGATGATGTTTGGACAGAGGATTATGTTGATTGGCGTCTTCTTAAGAAACCATTTAACCGTGGGATTAGGAGAAGTAAGATTCTTCTAACAACCCGCAGTGAAAAAACAGCATCTATAGTCCAAACTGTTCACACCTATCATCTAAACCAATTGTCGAATGAAGATTGTTGGTCAGTGTTTGCGAACCATGCGTGTCTTTACTCCGAATCGAACGGGAACACAACAACACTAGAAAAAATTGGAAAGGAGATTGTTAAAAAGTGCAACGGACTGCCTTTAGCAGCAGAGTCGCTTGGAGGCATGTTGAGAAGAAAGCATGACATTGGTGATTGGAATAATATTCTCAATAGTGACATTTGGGAACTTTCTGAAAGTGAGTGTAAAGTTATTCCAGCACTGAGACTTAGTTATCATTATCTCCCTCCACATTTAAAACGATGCTTTGTTTATTGTTCGTTGTATCCACAAGATTACGAATTTGAAAAAAATGAATTAATCTTGTTGTGGATGGCTGAAGATCTTTTGAAGAAACCAAGGAAAGGTAGGACTTTAGAAGAGGTTGGTCATGAGTATTTTGATGATTTGGTTTCGAGATTGTTTTTCCAACGTTCAAGTACTTGGCCTCATCGCAAATGTTTTGTGATGCATGACCTCATGCATGATCTAGCCACATCACTCGGTGGAGATTTTTACTTTAGATCAGAAGAACTTGGGAAAAAAACAAAGATCAACACCAAGACTCGTCATTTGTCATTTGCCAAATTCAATTCTTCATTCTTGGACAACCCTGATGTTGTTGGTAGAGTAAAATTTCTGAGAACTTTCTTGTCCATTATCAAATTTGCAGCTGCTCCATTCAACAATGAGGAGGCACAATGTATCATAATGTCAAAGCTTATGTACTTGAGAGTTTTATCATTTCATGACTTCAAAAGTCTGGATTCTTTGCCTGATTCAATAGGTAAATTGATCCATCTGCGCTATTTAGATCTTTCTGATTCAAGTATAGAAACACTGCCAAAGTCATTGTGTAATTTGTACAATCTGCAAACTTTGAAGTTGTGTAGTTGCAGAAAGCTGACTAAGTTGCCTAGTGACATGCGCAATCTTGTTAACTTGCGTCATCTTGACATAGATGGAACTCCTATAAAAGAGATGCCAAGAGGAATGAGTAAATTAAGTCATTTGCAACATCTGGATTTCTTTGTTGTGGGCAAGCACGAAGAGAATGGAATCAAAGAATTAGGAGGACTTTCAAATCTTCGTGGTCATCTTGAAATTAGGAACTTGGAGAATGTTTCCCAAAGTGATGAAGCGTTGGAGGCAAGGATAATGGATAAAAAACACATTAATAGTTTACAGTTGGAATGGTCTAGATGTAACAACAACAGTACCAACTTCCAACTTGAAATAGATGTGCTTTGCAAGTTACAGCCTCACTTTAACATTGAATCGTTGCAAATAGAAGGTTATGAAGGAACCAGGTTTCCAGATTGGATGGGAAATTCTTCCTACTGCAATATGACAAGTCTAACCTTACTTGATTGTGACAACTGTAGTATGCTTCCTTCACTAGGACAACTACCTTCTCTCAAGGACCTTGAAATTGCACGATTGAATAGGCTGAAGACTATTGATGCAGGTTTTTACAAGAACGAAGATTGTCGTTCTGGGACGCCCTTTCCCTCCCTTGAATCTCTGTTCATTTATGAAATGTCTTGTTGGGGGGTGTGGAGTTCCTTCGATTCAGAAGCTTTTCCTGTGCTTAAAAGTCTTGAAATACGTGGCTGCCCCAAACTAGAGGGAAGTTTGCCGAATCACCTTCCTGCTCTGACAAAACTTGTGATTAGAAATTGCGAGCTGCTTGTCTCTTCTCTCCCAACGGCTCCTGCCATTCAAAGTTTGGAGATACGTAAAAGCAATAAAGTAGCACTGCATGCGTTTCCTCTCTTGCTAGAGACTATAGAAGTAGAAGGAAGCCCAATGGTGGAGTCCATGATAGAGGCCATCACTAACATCCAACCAACTTGTCTCCGGTCTTTAACATTAAGGGATTGCTTGTCAGCCGTGTCATTTCCGGGTGGTCGTTTACCAGAATCACTGAAGAGTCTGAGTATCAAGGATCTTAAAAAACTGGAATTCCCGACGCAACACAAACATGAGTTACTGGAAAAACTGTCAATAGAAAGCAGTTGTGATTCACTCACATCTCTTCCATTGGTTACCTTTCCAAATCTCAGAGATCTTGAAATCCAAAACTGTGAAAATATGGAATATCTTTTGGTTTCAGGGGCAGAGTCATTTAAGAGTCTGTGTTCTTTTAGAATTTACCAATGCCCCAACTTTGTATCATTCTGGAGAGAAGGATTGCCTGCGCCCAACTTGATTACATTCATTGTTTCGGGCTCTGACAAGTTGAAGTCGTTGCCTGATGAGATGAGTACTCTTCTCCCAAAGTTAGAAGATCTCGGCATATTCAACTGCCCAGAAATTGAGTCCTTTCCAAAACGGGGTATGCCACCTAACCTGAGAACAGTTTGGATTGAGAATTGTGAGAAACTACTGAGCGGCCTAGCATGGCCATCCATGGGCATGCTTACTGATCTCTATCTTTGGGGTCGATGTGATGGCATCATGTCCTTCCCTAAGGAGGGTTTGCTGCCTCCCTCCCTTACGTTTCTGTTTCTATGTGGATTCTCAAATCTGGAGATGTTGGACTGCACAGGGCTTCTCCATCTCACATCCCTGCAACAATTAGAAATTAAGGGATGTCCAAAGCTGGAGAATATGGCTGGAGAAAGTCTTCCTGTCTCTCTAATAAATTTAACCATAGGGGGTTGTCCTTTGCTGGAAAAACGATGCCGCATGAAGCACCCTCAAATTTGGCCTAAAATTTCCCACATCCCTGGCATTAAGGTTGACGATAGATGGATTTAG 3741 0.4076 MAAALVGGAFLSAFLDVLFDRLASPDFVDLIRGKKLSKKLLQKLETTLRVVGAVLDDAEKKQITDTNVKHWLNALKDAVYEADDLLDHVFTKAATQNKVRDLFSRFSDSKIVSKLEDIVVTLESHLKLKESLDLKESAVENLSWKAPSTSLEDGSHIYGREKDKEAIIKLLLEDNSDGREVSVVPIVGMGGVGKTTLVQLVYNDENLKQIFDFDFKAWVCVSQEFDVLKVTKTIIEAVTGKACKLNDLNLLHLELMDKLKDKKFLIVLDDVWTEDYVDWRLLKKPFNRGIRRSKILLTTRSEKTASIVQTVHTYHLNQLSNEDCWSVFANHACLYSESNGNTTTLEKIGKEIVKKCNGLPLAAESLGGMLRRKHDIGDWNNILNSDIWELSESECKVIPALRLSYHYLPPHLKRCFVYCSLYPQDYEFEKNELILLWMAEDLLKKPRKGRTLEEVGHEYFDDLVSRLFFQRSSTWPHRKCFVMHDLMHDLATSLGGDFYFRSEELGKKTKINTKTRHLSFAKFNSSFLDNPDVVGRVKFLRTFLSIIKFAAAPFNNEEAQCIIMSKLMYLRVLSFHDFKSLDSLPDSIGKLIHLRYLDLSDSSIETLPKSLCNLYNLQTLKLCSCRKLTKLPSDMRNLVNLRHLDIDGTPIKEMPRGMSKLSHLQHLDFFVVGKHEENGIKELGGLSNLRGHLEIRNLENVSQSDEALEARIMDKKHINSLQLEWSRCNNNSTNFQLEIDVLCKLQPHFNIESLQIEGYEGTRFPDWMGNSSYCNMTSLTLLDCDNCSMLPSLGQLPSLKDLEIARLNRLKTIDAGFYKNEDCRSGTPFPSLESLFIYEMSCWGVWSSFDSEAFPVLKSLEIRGCPKLEGSLPNHLPALTKLVIRNCELLVSSLPTAPAIQSLEIRKSNKVALHAFPLLLETIEVEGSPMVESMIEAITNIQPTCLRSLTLRDCLSAVSFPGGRLPESLKSLSIKDLKKLEFPTQHKHELLEKLSIESSCDSLTSLPLVTFPNLRDLEIQNCENMEYLLVSGAESFKSLCSFRIYQCPNFVSFWREGLPAPNLITFIVSGSDKLKSLPDEMSTLLPKLEDLGIFNCPEIESFPKRGMPPNLRTVWIENCEKLLSGLAWPSMGMLTDLYLWGRCDGIMSFPKEGLLPPSLTFLFLCGFSNLEMLDCTGLLHLTSLQQLEIKGCPKLENMAGESLPVSLINLTIGGCPLLEKRCRMKHPQIWPKISHIPGIKVDDRWI* 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0287 1246 Gene3D - 140 314 IPR027417 -
Gso3g0287 1246 Coils Coil 41 61 - -
Gso3g0287 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 419 IPR027417 -
Gso3g0287 1246 SUPERFAMILY L domain-like 482 901 - -
Gso3g0287 1246 SMART LRR_typ_2 638 661 IPR003591 -
Gso3g0287 1246 SMART LRR_typ_2 591 614 IPR003591 -
Gso3g0287 1246 Pfam NB-ARC domain 160 385 IPR002182 GO:0043531
Gso3g0287 1246 Gene3D - 21 119 - -
Gso3g0287 1246 Gene3D Ribonuclease Inhibitor 546 945 IPR032675 -
Gso3g0287 1246 Gene3D Ribonuclease Inhibitor 1107 1224 IPR032675 -
Gso3g0287 1246 Gene3D Ribonuclease Inhibitor 963 1106 IPR032675 -
Gso3g0287 1246 PANTHER DISEASE RESISTANCE PROTEIN RP 967 1206 IPR044974 GO:0006952
Gso3g0287 1246 PANTHER DISEASE RESISTANCE PROTEIN RP 19 896 IPR044974 GO:0006952
Gso3g0287 1246 Gene3D - 404 493 IPR036388 -
Gso3g0287 1246 Gene3D - 318 403 IPR042197 -
Gso3g0287 1246 Pfam Rx N-terminal domain 10 98 IPR041118 -
Gso3g0287 1246 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED 19 896 - -
Gso3g0287 1246 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 1-RELATED 967 1206 - -
Gso3g0287 1246 PRINTS Disease resistance protein signature 183 198 - -
Gso3g0287 1246 PRINTS Disease resistance protein signature 258 272 - -
Gso3g0287 1246 PRINTS Disease resistance protein signature 356 370 - -
Gso3g0287 1246 PRINTS Disease resistance protein signature 774 790 - -
Gso3g0287 1246 SUPERFAMILY L domain-like 935 1233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0287 Gso-Chr3 4240708 4245224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0287 581 669 WRKY Transcription Factor Family AT4G12020 38.889 2.09e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0287 - - gmx:100777231 2229.14