Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0280 ATGAAGCAAGTGCAGTTCACCCTACTCCTATCAGTGTCTCTTGTTATTCTTTTTGGTCCAATCCTAGTTATCTCAGTAGACCTTTCTTTCAACGATGATGTGTTGGGGTTGATAATGTTCAAGGCTGGTCTACAAGACCCAAAAGGGAAACTCTCTACGTGGAACGAAGATGATTATAGTCCTTGCCACTGGGTTGGTGTCAAATGTGACCCTGCAAACAATAGGGTATCTTCTCTTGTTCTTGATGGATTCTCTCTTTCTGGCCACATTGATAGAGGCCTTTTGAGGTTGCAGTTCCTTCAGATTCTGTCTCTCTCTAGGAACAACTTCACAGGGACCATAGCTCCTGATCTTCTCACAATTGGTGATTTGCTAGTTGTTGATTTGAGTGAGAACAACCTCTCTGGACCAATCCCAGATGGGATTTTCCAGCAATGTTGGTCTCTAAGAGTAGTTTCATTTGCCAACAACAACCTCACAGGTAAGGTTCCTGATTCTTTGAGCTCATGCTATTCATTGGCAATTGTGAACTTTTCCTCTAACCAGCTACACGGGGAATTGCCATCTGGAATGTGGTTCTTGAGGGGGCTACAGTCAATTGATCTTTCAAACAACTTTCTGGAGGGAGAGATTCCAGAAGGAATTCAGAACCTGATTGATTTGAGGGAGTTGAGGCTAGGTAGTAACCACTTCACTGGTAGGGTTCCTGAGCATATTGGAGACTGCTTGCTTTTGAAGTTGGTTGATTTCAGTGGCAATTCTCTCTCTGGAAGACTTCCTGAGTCAATGCAAAAGCTCACCTCATGCACATTCCTCAGCTTGCAAGGGAATTCATTCACTGGTGGCATTCCACACTGGATAGGAGAAATGAAAAGTCTAGAGACATTGGATTTTTCAGCAAACAGATTTTCTGGTTGGATTCCAAATTCTATAGGAAATCTTGACTTGCTGAGTAGGTTGAATCTGTCAAGGAATCAGATCACAGGAAACCTGCCAGAGTTAATGGTAAACTGCATTAAACTTTTGACTCTTGACATCAGCCACAATCACTTGGCAGGCCATCTTCCTTCATGGATATTTAGGATGGGTTTACAAAGTGTCTCTCTTTCAGGGAATAGCTTCAGTGAGAGCAATTATCCCTCACTTACTTCCATTCCTGTATCTTTTCATGGCCTCCAGGTTTTGGATTTGTCATCAAATGCATTTTTTGGTCAACTTCCATCTGGAGTTGGAGGTCTTAGTAGCTTGCAAGTCTTGAATTTGTCCACCAACAATATCTCAGGGTCTATTCCTGTGAGTATTGGAGAACTTAAATCTTTGTGCATTCTTGACTTAAGTAACAACAAGCTTAATGGAAGCATTCCTTCCGAAGTAGAAGGGGCAATTTCACTCAGTGAAATGAGGCTACAAAAGAACTTCTTAGGTGGGAGAATTCCAACCCAAATTGAGAAGTGTTCAGAACTAACATTTCTGAATCTTTCTCACAACAAGCTTATAGGTTCAATCCCTTCAGCCATTGCAAACCTAACCAATCTTCAGCATGCAGATTTCTCATGGAATGAGCTCTCAGGAAACTTACCAAAGGAGCTGACAAATCTTTCCAACCTTTTCTCATTTAATGTTTCGTACAACCACCTCCTAGGTGAGCTACCAGTGGGTGGTTTCTTCAATATCATCTCTCCTTCATCTGTCTCTGGTAATCCATTGTTATGTGGTTCTGTTGTTAATCACTCTTGCCCTTCTGTTCATCCAAAGCCTATTGTCCTAAACCCCAATTCTTCTTACTCCAACTCTGGCTCTTCCTTACAAAACCATCAACATAGGATGATGCTCAGTATCTCTGTCATTATTGCCATCGGTGCTGCTATTTTTATTGTCATTGGTGTGGTGGTTGTTACTGTCCTAAATATCCATGCAAGGTCTTCGATGATACCTTCTGCTGCTCCATTTGTGTTCTCCGGTGGTGAAGACTATAGTGGTTCACCCAGGAACGATCCAAACTATGGCAAGCTTGTGATGTTTTCTGGTGATGCTGAATTTGCTGATGGTGCTCATAATCTTCTTAACAAAGACAGTGAAATAGGCCGTGGAGGATTTGGAGTTGTTTATTGCACTGTCCTTAGAGATGGTCATTGTGTTGCAATCAAGAAGCTTACAGTGTCCACCTTGACCAAATCTCAAGAAGACTTTGATAGGGAGGTTAAAATGCTTGGGGAGATCAAGCATCAAAATCTAGTGGCACTTGAAGGTTTTTATTGGACTCCATCCTTGCAGCTACTAATTTATGAGTACCTAGCCAGAGGGAGTTTGCAAAAGCTTCTACATGATGATGATGATAGCAGCAAGAATGTGCTTTCTTGGAGACAAAGGTTCAAGATCATTCTTGGAATGGCAAAAGGGTTGGCCTATTTGCACCAAATGGAGTTAATTCACTATAATCTAAAGTCAACCAATGTTTTCATAGATTGTTCTGATGAACCAAAGATTGGAGACTTTGGCTTGGTGAGGCTATTGCCAATGCTAGACCATTGTGTTTTGAGCAGCAAAATCCAAAGTGCACTTGGATACACGGCTCCTGAGTTTGCTTGCCGCACGGTCAAGATAACCGAGAAGTGTGACATTTATAGTTTTGGAATTTTGATTTTGGAGGTGGTAACAGGAAAAAGACCTGTGGAATACACGGAGGATGATGTTGTTGTTCTTTGTGACAAGGTGAGAAGTGCATTGGATGATGGCAAAGTGGAGCAATGTGTTGATGAGAAGCTTAAGGGTAATTTTGCTGCAGATGAAGCAATTCCTGTGATAAAATTGGGGTTGGTTTGTGCATCACAAGTGCCCTCAAACCGTCCTGATATGGCTGAGGTAATCAACATATTAGAGTTGATCCAATGTCCTTCAGAGGAATTACAATGA 2913 0.4181 MKQVQFTLLLSVSLVILFGPILVISVDLSFNDDVLGLIMFKAGLQDPKGKLSTWNEDDYSPCHWVGVKCDPANNRVSSLVLDGFSLSGHIDRGLLRLQFLQILSLSRNNFTGTIAPDLLTIGDLLVVDLSENNLSGPIPDGIFQQCWSLRVVSFANNNLTGKVPDSLSSCYSLAIVNFSSNQLHGELPSGMWFLRGLQSIDLSNNFLEGEIPEGIQNLIDLRELRLGSNHFTGRVPEHIGDCLLLKLVDFSGNSLSGRLPESMQKLTSCTFLSLQGNSFTGGIPHWIGEMKSLETLDFSANRFSGWIPNSIGNLDLLSRLNLSRNQITGNLPELMVNCIKLLTLDISHNHLAGHLPSWIFRMGLQSVSLSGNSFSESNYPSLTSIPVSFHGLQVLDLSSNAFFGQLPSGVGGLSSLQVLNLSTNNISGSIPVSIGELKSLCILDLSNNKLNGSIPSEVEGAISLSEMRLQKNFLGGRIPTQIEKCSELTFLNLSHNKLIGSIPSAIANLTNLQHADFSWNELSGNLPKELTNLSNLFSFNVSYNHLLGELPVGGFFNIISPSSVSGNPLLCGSVVNHSCPSVHPKPIVLNPNSSYSNSGSSLQNHQHRMMLSISVIIAIGAAIFIVIGVVVVTVLNIHARSSMIPSAAPFVFSGGEDYSGSPRNDPNYGKLVMFSGDAEFADGAHNLLNKDSEIGRGGFGVVYCTVLRDGHCVAIKKLTVSTLTKSQEDFDREVKMLGEIKHQNLVALEGFYWTPSLQLLIYEYLARGSLQKLLHDDDDSSKNVLSWRQRFKIILGMAKGLAYLHQMELIHYNLKSTNVFIDCSDEPKIGDFGLVRLLPMLDHCVLSSKIQSALGYTAPEFACRTVKITEKCDIYSFGILILEVVTGKRPVEYTEDDVVVLCDKVRSALDDGKVEQCVDEKLKGNFAADEAIPVIKLGLVCASQVPSNRPDMAEVINILELIQCPSEELQ* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0280 970 Gene3D Ribonuclease Inhibitor 30 307 IPR032675 -
Gso3g0280 970 SUPERFAMILY Protein kinase-like (PK-like) 688 965 IPR011009 -
Gso3g0280 970 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524
Gso3g0280 970 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 963 - -
Gso3g0280 970 Gene3D Ribonuclease Inhibitor 308 585 IPR032675 -
Gso3g0280 970 SUPERFAMILY L domain-like 48 379 - -
Gso3g0280 970 SMART LRR_typ_2 389 413 IPR003591 -
Gso3g0280 970 SMART LRR_typ_2 437 461 IPR003591 -
Gso3g0280 970 SMART LRR_typ_2 314 338 IPR003591 -
Gso3g0280 970 SMART LRR_typ_2 290 313 IPR003591 -
Gso3g0280 970 SMART LRR_typ_2 218 242 IPR003591 -
Gso3g0280 970 SMART LRR_typ_2 533 557 IPR003591 -
Gso3g0280 970 SMART LRR_typ_2 121 145 IPR003591 -
Gso3g0280 970 SMART LRR_typ_2 339 362 IPR003591 -
Gso3g0280 970 SMART LRR_typ_2 194 217 IPR003591 -
Gso3g0280 970 Pfam Leucine rich repeat 391 450 IPR001611 GO:0005515
Gso3g0280 970 Pfam Protein kinase domain 689 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0280 970 ProSiteProfiles Protein kinase domain profile. 688 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0280 970 Gene3D Phosphorylase Kinase; domain 1 673 764 - -
Gso3g0280 970 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 963 - -
Gso3g0280 970 Pfam Leucine Rich Repeat 197 218 IPR001611 GO:0005515
Gso3g0280 970 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Gso3g0280 970 Gene3D Transferase(Phosphotransferase) domain 1 765 968 - -
Gso3g0280 970 SUPERFAMILY L domain-like 291 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0280 Gso-Chr3 3963861 3968483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0280 7 966 Receptor kinase-like Gene Family AT3G56370 58.696 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Gso3g0280 Pkinase 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0280 - - gmx:100812508 1871.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0280 3 3963861 3968483 Gso3g0280 3 3963861 3968483 ECH
Gso1g1134 1 45863573 45868117 Gso3g0280 3 3963861 3968483 GST
Gso9g2267 9 46928447 46932760 Gso3g0280 3 3963861 3968483 PCT
Gso3g0280 3 3963861 3968483 Gso9g2267 9 46928447 46932760 PCT