Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0278 ATGAGCCAGCGTGTCCCCAACTGCGATGTGGACGACAATAACAACATTCCCACAACCACAAAAATCCCTCTTCTTCCCAATTTCAATTTCATATCCCATGAAGTTCCTATGTTGGGCTACCAAGCTGCTGAACTACCATGCAAAAAGGGACAACCTTCGACGTACAAAGGCAGCCACGGAAACCTAACTAGTACGTGGGACAAACCTCGTACAAGTGGTGGTACCTTGGAGTCCATAGTTAGCCAACATGTCAGCGAAAACCGCTACAAGTTGGTTACTATGGACGCCTTAGTGCCCTGTTCAGAACAACAGAGCACACAGAAGGCAGTGGTGTCAGAAAGGCTTGACGCGTGTGGGAAGAGTCGCTTCCCACGCGTGGTGGCACAGGAGGAAGTGGAGAAACGCGCTGGGGTGGTGGCGCGTGGGACGCGTGGTACTACAACGCTAGAATTGGGTGGCTGCAAGGATTGGAGTGTGAGTGGTAGTGAAACTTGTCGTAGGGAGTTGAGTGTGACCTTCAATTCTGCCACCAAGGGTTCGCCGGAAAACACCACTTGCTCTGGCAAACAGTGCACCGGGACCACCACCAATGACGACCGTGATTCCATTAGCCACCGTATATCGCAGGGTGAGGTACCGGATGAGGATTACAAGGCAACAAAAGTTGATAGATCTTCTGGGTCCAACAAAAGAATCAAAGCTAATTCAGTAGTGCACAAACAATCTGAACGGAGAAGAAGAGATAAGATCAACCAAAGAATGAAGGAATTGCAAAAGCTGGTCCCAAATTCCAGTAAGACTGATAAAGCTTCGATGCTAGATGAGGTGATCCAATATATGAAGCAATTGCAAGCGCAAGTGCAAATGATGAATTGGATGAAAATGTACACCTCCATGATGCTGCCAATAACCATGCAGCAGCAGCAACAACAACAACTTAAAATGTCTATGATGATGGCTCAGATGGGCATGGGCATGGGAATGAGTAAGGATATGGTTATGAATATGAACAGCATGAACATTCCTGGATTCCCCCCTATGCTTCCCTTCCCCTCCTTCATGCCTATGGCCCCATGTGGCGATCAATTACAAGGAACACCAGAGAAGTCCGTGACCATGGATGCATACAGTACGATGGCTTCCCTGTATCAGCAGCTATTTCATCCTCCAGCTTCTAGCTCAAAGAACTGA 1191 0.4803 MSQRVPNCDVDDNNNIPTTTKIPLLPNFNFISHEVPMLGYQAAELPCKKGQPSTYKGSHGNLTSTWDKPRTSGGTLESIVSQHVSENRYKLVTMDALVPCSEQQSTQKAVVSERLDACGKSRFPRVVAQEEVEKRAGVVARGTRGTTTLELGGCKDWSVSGSETCRRELSVTFNSATKGSPENTTCSGKQCTGTTTNDDRDSISHRISQGEVPDEDYKATKVDRSSGSNKRIKANSVVHKQSERRRRDKINQRMKELQKLVPNSSKTDKASMLDEVIQYMKQLQAQVQMMNWMKMYTSMMLPITMQQQQQQQLKMSMMMAQMGMGMGMSKDMVMNMNSMNIPGFPPMLPFPSFMPMAPCGDQLQGTPEKSVTMDAYSTMASLYQQLFHPPASSSKN* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0278 396 Pfam Helix-loop-helix DNA-binding domain 238 284 IPR011598 GO:0046983
Gso3g0278 396 MobiDBLite consensus disorder prediction 199 228 - -
Gso3g0278 396 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 40 396 IPR031066 -
Gso3g0278 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983
Gso3g0278 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 307 IPR036638 GO:0046983
Gso3g0278 396 SMART finulus 240 289 IPR011598 GO:0046983
Gso3g0278 396 Coils Coil 240 260 - -
Gso3g0278 396 MobiDBLite consensus disorder prediction 176 198 - -
Gso3g0278 396 PANTHER TRANSCRIPTION FACTOR UNE10-LIKE 40 396 - -
Gso3g0278 396 CDD bHLH_AtPIF_like 238 297 - -
Gso3g0278 396 Gene3D - 229 295 IPR036638 GO:0046983
Gso3g0278 396 MobiDBLite consensus disorder prediction 176 248 - -
Gso3g0278 396 MobiDBLite consensus disorder prediction 54 73 - -
Gso3g0278 396 MobiDBLite consensus disorder prediction 51 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0278 Gso-Chr3 3946747 3950723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0278 1 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 40.252 6.32e-47 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso3g0278 HLH 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0278 - - gmx:100788617 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1136 1 45875109 45879065 Gso3g0278 3 3946747 3950723 GST