Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0276 ATGATGCAAGTTCTTCTTTACATGTCTTTCGTTGTAGTAATATTTTCTCTGTTACTAAACCCTTGCCATTGTCTCAATCTCAAATTATTTAATGGTTCCAAAATTCAAAATGAAGAACAATGGCAAGTAGCAGGAGCTACAATGTTTGGACCACCAGAGGGTGCTGGGTCGGATGGGGGTGCTTGTGGATACATTGACAGTGTGGAAAAACCTCCACTCTCTAAAATGGTATCAGCTGGGGGTCCTTCTCTTTACCTTGGTGGCAGAGGATGCGGGGCATGCTATCAGGTAAAATGCACAGAAAATGCCTTTTGTTCAGGAAACCCTGTGAGCGTGATGATAACTGATGAATGTCCCGGTTGTACCTCACCATCAGTTCATTTTGATCTCAGTGGCACTGCCTTTGGTTCCATGGCAACTCCAGGCCAAGCAGATAATCTTCGCAATGCTGGAGTGCTTAATATTCTCTACAGAAGGGTTGCATGCTCCTTTGGGAACTCTATGGCCTTCACTATCGATAATGGGGCCAACCCATATTATTTTGCTACCGAAATAGAATACGAAAATGGGGGTAGTGACCTTGTGGCCATAGAGTTGAAGCAAGCTAATTCTGACACGTGGCTTCCCATGCAGCGTTCATGGGGTGCAAGGTGGGCTTTGAATTTAGGTTTACAATTACAAGCACCATTATCTATTAAGCTCACAGAACAAGGCAAGGGCTATTACAAGACAATTGTGGCTGATAGTGTAATTCCACATGGCTGGCAACCTGGCCAAGTTTATCGATCTGTTGTTAATTTTTAA 804 0.4366 MMQVLLYMSFVVVIFSLLLNPCHCLNLKLFNGSKIQNEEQWQVAGATMFGPPEGAGSDGGACGYIDSVEKPPLSKMVSAGGPSLYLGGRGCGACYQVKCTENAFCSGNPVSVMITDECPGCTSPSVHFDLSGTAFGSMATPGQADNLRNAGVLNILYRRVACSFGNSMAFTIDNGANPYYFATEIEYENGGSDLVAIELKQANSDTWLPMQRSWGARWALNLGLQLQAPLSIKLTEQGKGYYKTIVADSVIPHGWQPGQVYRSVVNF* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0276 267 Pfam Lytic transglycolase 78 157 IPR009009 -
Gso3g0276 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 263 IPR007117 -
Gso3g0276 267 Gene3D - 28 163 IPR036908 -
Gso3g0276 267 SUPERFAMILY Barwin-like endoglucanases 39 164 IPR036908 -
Gso3g0276 267 Gene3D - 164 267 IPR036749 -
Gso3g0276 267 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576|GO:0019953
Gso3g0276 267 PRINTS Major pollen allergen Lol pI signature 99 109 IPR005795 GO:0005576|GO:0019953
Gso3g0276 267 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576|GO:0019953
Gso3g0276 267 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576|GO:0019953
Gso3g0276 267 PRINTS Major pollen allergen Lol pI signature 186 201 IPR005795 GO:0005576|GO:0019953
Gso3g0276 267 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576|GO:0019953
Gso3g0276 267 PANTHER EXPANSIN-B3 2 267 - -
Gso3g0276 267 SUPERFAMILY PHL pollen allergen 167 263 IPR036749 -
Gso3g0276 267 Pfam Expansin C-terminal domain 169 252 IPR007117 -
Gso3g0276 267 PANTHER EXPANSIN-LIKE PROTEIN B1 2 267 - -
Gso3g0276 267 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Gso3g0276 267 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Gso3g0276 267 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Gso3g0276 267 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Gso3g0276 267 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Gso3g0276 267 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Gso3g0276 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 167 IPR007112 -
Gso3g0276 267 SMART dpbb_1 77 157 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0276 Gso-Chr3 3902559 3905229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0276 20 267 Expansin Gene Family AT1G65680 54.980 3.72e-96 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0276 - - gmx:100786475 554.288