Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso3g0275 | ATGGCTTTGATATCGGATCAACAATCAAACTTCAAGCACTTCTGTAAAATTTGCAAGAAAGGTTTTGGTTGTGGGAGAGCTTTGGGAGGTCACATGAGGGCTCATGGCATAGGAGATGAAAGTGGTCACATGGATGATGATGACCAAGCAAGTGATTGGGAAGATAGGTTGGGTGGAAATGTGCCACCAAGCAACAAACGCATGTATGCCCTAAGAACAAACCCTAATAGGCTAAAGAGTTGTAGGGTGTGTGAGAATTGTGGCAAAGAGTTCTTGTCATGGAAATCTTTCCTTGAACATGGAAAATGCACCTCTGAGGATGCTGAGTCCTTAGTCTCCTCTCCCGGGTCCGACGCCGACGATGGTGACATCGGTGGTGGCGGCCGGAGAGGATGTGGATGGTCCAAAAGTAAAAGGTCGTTGAGAACTAAGGTTGGTAGCTTCAATTACAATTGCCCATCAAGCGAGGAAGAAGACCTTGCAAATTGTTTAATGATGTTATCCAATGCCATTGTAGATCCTCTTGTAGCCGAGCCTGAAGAATCTTGTGCATCAGCTAGCAAAGAGGAAGAACAAAGAAGAAATTCCATGAACTTCATTGCACCATTGTCATACAAAGCTAACTACAACAACAACCTTGTTGATAACAAGACCAAAGGAGTTGCCAAGGGCTTGTTTGAATGCAAAGCATGCAAGAAGGTTTTCAATTCCCACCAAGCATTGGGTGGCCATAGAGCAAGCCACAAAAAGGTCAAGGGTTGCTTTGCTGCAAGGCTAGACAACCTTGATGACAATCTCATGGAGGATGATGTCATCACACATGAAGAGTTTTTCCCTACAAAATCAAACTCCACCCTCCAATTTGACCATGGAAGCTCCAACCCCTCATTGGCCTCTTCCTCCAAGAGAAAATCCAAAGTGCATGAATGCTCCATTTGCCATAGGAGCTTCTCTTCGGGACAAGCATTGGGGGGACACAAAAGGTGCCATTGGATCACTTCAAATGCTCCTGACACCTCCACATTAACAAGATTTCAACAATTCCAAGAGCACTTGGATCAAATACCCAAATTTGATACCTCTTCCGAGCCTCTTGATCTCAAATTAGACCTTAACCTTCCTGCACCCTCTAATGACCTTGCAAGAAGGAATGTGAACACAGAATTTTACTTGCAGCCTTGGGTTGCATCAAAGGATGCTAAAGATGATAACAATAATAGCCATTGTCAAAGTCTCCACAACCCTAATAACAATGTTGATGTTGACAATGATGAGGACAAAAACAACAACAACAACAACTCAATGCAAAACATGGATAATGAAGCTGATAGTAAGATCAAGTTGGCGAAACTGAGTGAGCTAAAGGACATGAAAGCTGGTGGCAGTTCTTCGCCATGGTTGCAGGTGGGGATCAGTTCAACTGCTACTGATGTGGAAACTGATAACTGCTGA | 1452 | 0.4387 | MALISDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGHMDDDDQASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLVSSPGSDADDGDIGGGGRRGCGWSKSKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLVAEPEESCASASKEEEQRRNSMNFIAPLSYKANYNNNLVDNKTKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDNLMEDDVITHEEFFPTKSNSTLQFDHGSSNPSLASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLTRFQQFQEHLDQIPKFDTSSEPLDLKLDLNLPAPSNDLARRNVNTEFYLQPWVASKDAKDDNNNSHCQSLHNPNNNVDVDNDEDKNNNNNNSMQNMDNEADSKIKLAKLSELKDMKAGGSSSPWLQVGISSTATDVETDNC* | 484 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso3g0275 | 483 | MobiDBLite | consensus disorder prediction | 108 | 136 | - | - | |
Gso3g0275 | 483 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 308 | 330 | IPR013087 | - | |
Gso3g0275 | 483 | MobiDBLite | consensus disorder prediction | 283 | 302 | - | - | |
Gso3g0275 | 483 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 310 | 330 | IPR013087 | - | |
Gso3g0275 | 483 | PANTHER | OS02G0659100 PROTEIN | 1 | 480 | - | - | |
Gso3g0275 | 483 | PANTHER | OS02G0659100 PROTEIN | 1 | 480 | - | - | |
Gso3g0275 | 483 | SUPERFAMILY | beta-beta-alpha zinc fingers | 225 | 330 | IPR036236 | - | |
Gso3g0275 | 483 | Coils | Coil | 421 | 441 | - | - | |
Gso3g0275 | 483 | MobiDBLite | consensus disorder prediction | 38 | 54 | - | - | |
Gso3g0275 | 483 | MobiDBLite | consensus disorder prediction | 38 | 59 | - | - | |
Gso3g0275 | 483 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 226 | 253 | IPR013087 | - | |
Gso3g0275 | 483 | Pfam | C2H2-type zinc finger | 307 | 332 | - | - | |
Gso3g0275 | 483 | Pfam | C2H2-type zinc finger | 13 | 35 | - | - | |
Gso3g0275 | 483 | Pfam | C2H2-type zinc finger | 226 | 250 | - | - | |
Gso3g0275 | 483 | MobiDBLite | consensus disorder prediction | 400 | 439 | - | - | |
Gso3g0275 | 483 | SUPERFAMILY | beta-beta-alpha zinc fingers | 13 | 101 | IPR036236 | - | |
Gso3g0275 | 483 | SMART | c2h2final6 | 226 | 248 | IPR013087 | - | |
Gso3g0275 | 483 | SMART | c2h2final6 | 308 | 330 | IPR013087 | - | |
Gso3g0275 | 483 | SMART | c2h2final6 | 13 | 35 | IPR013087 | - | |
Gso3g0275 | 483 | MobiDBLite | consensus disorder prediction | 283 | 301 | - | - | |
Gso3g0275 | 483 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 228 | 248 | IPR013087 | - | |
Gso3g0275 | 483 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 15 | 35 | IPR013087 | - | |
Gso3g0275 | 483 | Gene3D | Classic Zinc Finger | 224 | 330 | - | - | |
Gso3g0275 | 483 | Gene3D | Classic Zinc Finger | 11 | 103 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso3g0275 | Gso-Chr3 | 3878718 | 3880583 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso3g0275 | 136 | 373 | C2H2 Transcription Factor Family | AT1G02040 | 35.983 | 3.22e-31 | 121 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Gso3g0275 | zf-C2H2_6 | 1.6e-12 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso3g0275 | - | - | gmx:100793846 | 857.055 |