Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0275 ATGGCTTTGATATCGGATCAACAATCAAACTTCAAGCACTTCTGTAAAATTTGCAAGAAAGGTTTTGGTTGTGGGAGAGCTTTGGGAGGTCACATGAGGGCTCATGGCATAGGAGATGAAAGTGGTCACATGGATGATGATGACCAAGCAAGTGATTGGGAAGATAGGTTGGGTGGAAATGTGCCACCAAGCAACAAACGCATGTATGCCCTAAGAACAAACCCTAATAGGCTAAAGAGTTGTAGGGTGTGTGAGAATTGTGGCAAAGAGTTCTTGTCATGGAAATCTTTCCTTGAACATGGAAAATGCACCTCTGAGGATGCTGAGTCCTTAGTCTCCTCTCCCGGGTCCGACGCCGACGATGGTGACATCGGTGGTGGCGGCCGGAGAGGATGTGGATGGTCCAAAAGTAAAAGGTCGTTGAGAACTAAGGTTGGTAGCTTCAATTACAATTGCCCATCAAGCGAGGAAGAAGACCTTGCAAATTGTTTAATGATGTTATCCAATGCCATTGTAGATCCTCTTGTAGCCGAGCCTGAAGAATCTTGTGCATCAGCTAGCAAAGAGGAAGAACAAAGAAGAAATTCCATGAACTTCATTGCACCATTGTCATACAAAGCTAACTACAACAACAACCTTGTTGATAACAAGACCAAAGGAGTTGCCAAGGGCTTGTTTGAATGCAAAGCATGCAAGAAGGTTTTCAATTCCCACCAAGCATTGGGTGGCCATAGAGCAAGCCACAAAAAGGTCAAGGGTTGCTTTGCTGCAAGGCTAGACAACCTTGATGACAATCTCATGGAGGATGATGTCATCACACATGAAGAGTTTTTCCCTACAAAATCAAACTCCACCCTCCAATTTGACCATGGAAGCTCCAACCCCTCATTGGCCTCTTCCTCCAAGAGAAAATCCAAAGTGCATGAATGCTCCATTTGCCATAGGAGCTTCTCTTCGGGACAAGCATTGGGGGGACACAAAAGGTGCCATTGGATCACTTCAAATGCTCCTGACACCTCCACATTAACAAGATTTCAACAATTCCAAGAGCACTTGGATCAAATACCCAAATTTGATACCTCTTCCGAGCCTCTTGATCTCAAATTAGACCTTAACCTTCCTGCACCCTCTAATGACCTTGCAAGAAGGAATGTGAACACAGAATTTTACTTGCAGCCTTGGGTTGCATCAAAGGATGCTAAAGATGATAACAATAATAGCCATTGTCAAAGTCTCCACAACCCTAATAACAATGTTGATGTTGACAATGATGAGGACAAAAACAACAACAACAACAACTCAATGCAAAACATGGATAATGAAGCTGATAGTAAGATCAAGTTGGCGAAACTGAGTGAGCTAAAGGACATGAAAGCTGGTGGCAGTTCTTCGCCATGGTTGCAGGTGGGGATCAGTTCAACTGCTACTGATGTGGAAACTGATAACTGCTGA 1452 0.4387 MALISDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGHMDDDDQASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLVSSPGSDADDGDIGGGGRRGCGWSKSKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLVAEPEESCASASKEEEQRRNSMNFIAPLSYKANYNNNLVDNKTKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDNLMEDDVITHEEFFPTKSNSTLQFDHGSSNPSLASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLTRFQQFQEHLDQIPKFDTSSEPLDLKLDLNLPAPSNDLARRNVNTEFYLQPWVASKDAKDDNNNSHCQSLHNPNNNVDVDNDEDKNNNNNNSMQNMDNEADSKIKLAKLSELKDMKAGGSSSPWLQVGISSTATDVETDNC* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0275 483 MobiDBLite consensus disorder prediction 108 136 - -
Gso3g0275 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 308 330 IPR013087 -
Gso3g0275 483 MobiDBLite consensus disorder prediction 283 302 - -
Gso3g0275 483 ProSitePatterns Zinc finger C2H2 type domain signature. 310 330 IPR013087 -
Gso3g0275 483 PANTHER OS02G0659100 PROTEIN 1 480 - -
Gso3g0275 483 PANTHER OS02G0659100 PROTEIN 1 480 - -
Gso3g0275 483 SUPERFAMILY beta-beta-alpha zinc fingers 225 330 IPR036236 -
Gso3g0275 483 Coils Coil 421 441 - -
Gso3g0275 483 MobiDBLite consensus disorder prediction 38 54 - -
Gso3g0275 483 MobiDBLite consensus disorder prediction 38 59 - -
Gso3g0275 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
Gso3g0275 483 Pfam C2H2-type zinc finger 307 332 - -
Gso3g0275 483 Pfam C2H2-type zinc finger 13 35 - -
Gso3g0275 483 Pfam C2H2-type zinc finger 226 250 - -
Gso3g0275 483 MobiDBLite consensus disorder prediction 400 439 - -
Gso3g0275 483 SUPERFAMILY beta-beta-alpha zinc fingers 13 101 IPR036236 -
Gso3g0275 483 SMART c2h2final6 226 248 IPR013087 -
Gso3g0275 483 SMART c2h2final6 308 330 IPR013087 -
Gso3g0275 483 SMART c2h2final6 13 35 IPR013087 -
Gso3g0275 483 MobiDBLite consensus disorder prediction 283 301 - -
Gso3g0275 483 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Gso3g0275 483 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Gso3g0275 483 Gene3D Classic Zinc Finger 224 330 - -
Gso3g0275 483 Gene3D Classic Zinc Finger 11 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0275 Gso-Chr3 3878718 3880583 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0275 136 373 C2H2 Transcription Factor Family AT1G02040 35.983 3.22e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g0275 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0275 - - gmx:100793846 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1138 1 46012133 46013578 Gso3g0275 3 3878718 3880583 GST