Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0272 ATGGAGAAGCACAAGTGCAAGCTTTGCTTGCGGAGTTTCGCGAATGGAAGAGCGTTGGGAGGTCACATGCGGTCTCACATGATGAACCTACCTGTTCCTCCGAAACAGAGCGAGTTGGTGCCGATTCAACTCAGCTTCGAGGCCGAGTCATCTCCTTCGCAGTCTTCATCTTCTTTCTACGGTCTCAGAGAGAATCCCAAGAAAAACTTTCGCTTCGCAGATCCTGAATTCTCGTTCGCAGCAGCGGAAACTTCCTCCGTGATCCTGCAGGACAGGGAGAGCGAGACCGAGTCGTCGAGGAATCCGACTCGGAGACGATCCAAGAGAGCGTGGCAACAACTCGGCGGCGACAGCGGCGGTGGCGGTGGTGGTGATTCCGATGAATCAGAAAAAAAGATGATGAAAGTTTTTGACGCCGTAAACAAGAACAACAACGAATCCGCAAGTTCGGTTTCGGACACCACGACGGAGGAAGCCGTGGCATTCTGTCTCATGATGTTGTCTCGCGACAAATGGAAGGAAAACAACAAGTTATTATATGATAACAAGGTCGAGATAGCAGAATATAACGATGATTATGATGACGAGGAAGACGAAGACGAAGAAGAAGAGGAAGATGAAGAAATTTACGAATCCGAAGAGGAACTTAAATCTGTTAAAAAGAGTAACAAAGTGCGAGGAAGATACAAATGCGAGACGTGTGAAAAGGTGTTTCGATCTTATCAAGCTCTTGGAGGCCATCGTGCTAGTCACAAGAAGATCAAGCTCAACAACTGCGAAAACAAGAACAAGAACAACAACAACAACAACGACGATGAAGCTGAACAACTCGAAGTTCAGCACGTTGTTGTGGTGGAGAAGAAAATTCACGAATGTCCTGTTTGTTTTAGAGTATTTGCTTCTGGTCAGGCTCTGGGAGGACACAAGAGAACACATGTGATTGGTTCTTCGACTGCTGCTGCAACAACAACTGCGACAGCAATCACAACCGTTTCTGTTAGAAACTCTGTTGCAACTGTTTCGGTTAGAACAACTTCTACTGCTAGAGTTGTTGGAGATAGTTTGATAGATCTCAATCTCCCTGCTCCAATGGATGATGATGAAGAGGAGGAGGGGAATGTTAGCCAATTCGAAGACTCAGCTGTTTCGGATGCAGAGTTTGTTAAACTGTGA 1173 0.4638 MEKHKCKLCLRSFANGRALGGHMRSHMMNLPVPPKQSELVPIQLSFEAESSPSQSSSSFYGLRENPKKNFRFADPEFSFAAAETSSVILQDRESETESSRNPTRRRSKRAWQQLGGDSGGGGGGDSDESEKKMMKVFDAVNKNNNESASSVSDTTTEEAVAFCLMMLSRDKWKENNKLLYDNKVEIAEYNDDYDDEEDEDEEEEEDEEIYESEEELKSVKKSNKVRGRYKCETCEKVFRSYQALGGHRASHKKIKLNNCENKNKNNNNNNDDEAEQLEVQHVVVVEKKIHECPVCFRVFASGQALGGHKRTHVIGSSTAAATTTATAITTVSVRNSVATVSVRTTSTARVVGDSLIDLNLPAPMDDDEEEEGNVSQFEDSAVSDAEFVKL* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0272 390 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Gso3g0272 390 MobiDBLite consensus disorder prediction 189 217 - -
Gso3g0272 390 Coils Coil 186 213 - -
Gso3g0272 390 MobiDBLite consensus disorder prediction 189 212 - -
Gso3g0272 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Gso3g0272 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 290 312 IPR013087 -
Gso3g0272 390 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 390 - -
Gso3g0272 390 Pfam C2H2-type zinc finger 228 253 - -
Gso3g0272 390 Pfam C2H2-type zinc finger 290 312 - -
Gso3g0272 390 Pfam C2H2-type zinc finger 4 27 - -
Gso3g0272 390 MobiDBLite consensus disorder prediction 88 129 - -
Gso3g0272 390 Gene3D Classic Zinc Finger 226 312 - -
Gso3g0272 390 SUPERFAMILY beta-beta-alpha zinc fingers 228 312 IPR036236 -
Gso3g0272 390 Coils Coil 256 276 - -
Gso3g0272 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Gso3g0272 390 SMART c2h2final6 4 26 IPR013087 -
Gso3g0272 390 SMART c2h2final6 229 251 IPR013087 -
Gso3g0272 390 SMART c2h2final6 290 312 IPR013087 -
Gso3g0272 390 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
Gso3g0272 390 MobiDBLite consensus disorder prediction 362 385 - -
Gso3g0272 390 ProSitePatterns Zinc finger C2H2 type domain signature. 292 312 IPR013087 -
Gso3g0272 390 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 390 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0272 Gso-Chr3 3860994 3862702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0272 1 368 C2H2 Transcription Factor Family AT3G60580 41.711 1.35e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g0272 zf-C2H2_6 2.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0272 - - gsj:114405942 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1140 1 46036364 46037816 Gso3g0272 3 3860994 3862702 GST