Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0259 ATGGACCCAACAACAAACCTTGTTGAGTTTTCATCTCAGAATTTGGAAGCATGTACCAACAATTTCAGTCAGAGCAATCTCATTGGCTTGACAAAGTTTGGTAGATTGTATAGAGGCATCCTTGAAGGTCAACATGTAGTAGTGAAGATATGGGATGGTGAAAGAATGGAACAGTTAAGTTCCAAATATGATGATGAGAATTTGATTATCAAAGAGGAAGTAAAATTTTGGACTAATCCAACATTAAGAGGTTACCCCAATTTGGTGAAGTTGATTGGTTATACTTGGGAGAGAGATGCAAAGGGACTTGTTTATGATCTCAATCCACTTGATACTTTGGATAACGTAATAATGAAAGATAACCTGAATTGGCTTCAGAGAATAAATGTAATTCATGAACTTGCAAAGCTCCTGAAATTCATTCATGACCAGGAAAAGCAAAATATGGTGTTGAATATCAGTGCATCTCATATTCTTCTCGACAAGGATTACAAGCCAAATTTTATTGATTTGGTGTTGCTTAGTGAAGTGACAATGCTAAGGGAACAACTAACAATGTCAACTAGCTACATCAATCCTTATTTTTCTCTAAGGGGTGGTGAATGGGATAGAAGCTGTGAAGTGTTCTCATTTGGCATTGTTTTGCTTGAACTAATAACCAAAAGAGTTTCAGTCATTGGGAAGAGAGAACATGCAAGCATAAACTTGGACGGTGTGGTTCATATTTGGGCCAAGAAAGAATACAAGCCAAATTGTTCTCTTGTCCATGAAACTTTGCAGGAAGATTGGTGTTACTGTGCTGAAGATGGTGTTTCAATAACTTTATTGGCATTGCAATGCATAGAATTTTTTCCAGCAAACCGTCCAACAATGAGGGATGTCTTGCACAGGCTAGATAATCTTTTGGTGTTACAACGTATGGCTGATGCTAGAGCAACCAAAAGGGAAAAGCAACTCATTTCATCCTGA 969 0.3746 MDPTTNLVEFSSQNLEACTNNFSQSNLIGLTKFGRLYRGILEGQHVVVKIWDGERMEQLSSKYDDENLIIKEEVKFWTNPTLRGYPNLVKLIGYTWERDAKGLVYDLNPLDTLDNVIMKDNLNWLQRINVIHELAKLLKFIHDQEKQNMVLNISASHILLDKDYKPNFIDLVLLSEVTMLREQLTMSTSYINPYFSLRGGEWDRSCEVFSFGIVLLELITKRVSVIGKREHASINLDGVVHIWAKKEYKPNCSLVHETLQEDWCYCAEDGVSITLLALQCIEFFPANRPTMRDVLHRLDNLLVLQRMADARATKREKQLISS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0259 322 Pfam Protein kinase domain 23 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0259 322 PANTHER RECEPTOR-LIKE KINASE 5 310 - -
Gso3g0259 322 SMART serkin_6 22 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0259 322 Gene3D Phosphorylase Kinase; domain 1 2 107 - -
Gso3g0259 322 Gene3D Transferase(Phosphotransferase) domain 1 110 320 - -
Gso3g0259 322 PANTHER OS01G0588500 PROTEIN-RELATED 5 310 - -
Gso3g0259 322 ProSiteProfiles Protein kinase domain profile. 22 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g0259 322 SUPERFAMILY Protein kinase-like (PK-like) 6 298 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0259 Gso-Chr3 3681680 3684359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0259 4 300 Receptor kinase-like Gene Family AT4G23320 29.430 2.77e-30 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso3g0259 Pkinase 2.7e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0259 - - gmx:102662076 653.284