Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0238 ATGTCCTCCTCATCCACTTCCTTTTCACCGGACCAACAACACCTCTCTCCCTCCGACCAGCTCTGCTATGTCCATTGCAACTTCTGTGACACTGTCCTCGCGGTGAGTGTTCCTTGCACCAGCTTGTTCAAGAATGTCACTGTGAGATGTGGTCATTGCACCAACCTTCTCTCAGTCAACATGCGTGGACTGCTTCTTCCCAGTGCCAATCAGCTTCACCTTGGCCACACTTTCTTCACTCCTCAAAATCTTATGGAGGAGATTCGTAATGCACCTTCAACAAACATAATGATGAATCAGCTGCCGAACCCTAATGATTTGGTCATGAGCACCATGAGAGGAGGGCCTGAAGAAACCCCTAAGCCTCCATCAGCTAATAGACCTCCAGAGAAGAGACAGCGAGTTCCGTCTGCTTACAACCGCTTCATCAAGGATGAGATCCAACGTATCAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCCTTTAGTGCAGCTGCAAAGAATTGGGCCCATTTTCCACACATTCATTTCGGACTCATGCCTGATAATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGAAGCAGAGGACGTGCTTATGAAAGATGGGTTTTTCGCACCGGCTAATGTAGGCGTCTCTCCCTACTAG 651 0.4854 MSSSSTSFSPDQQHLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKNVTVRCGHCTNLLSVNMRGLLLPSANQLHLGHTFFTPQNLMEEIRNAPSTNIMMNQLPNPNDLVMSTMRGGPEETPKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDNQPVKKANVRQEAEDVLMKDGFFAPANVGVSPY* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0238 216 MobiDBLite consensus disorder prediction 109 134 - -
Gso3g0238 216 PANTHER PROTEIN YABBY 4 1 214 - -
Gso3g0238 216 Gene3D High mobility group box domain 117 198 IPR036910 -
Gso3g0238 216 PANTHER PROTEIN YABBY 6-RELATED 1 214 IPR006780 GO:0007275
Gso3g0238 216 Pfam YABBY protein 17 180 IPR006780 GO:0007275
Gso3g0238 216 SUPERFAMILY HMG-box 121 173 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0238 Gso-Chr3 3296412 3299510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0238 28 214 C2C2-YABBY Transcription Factor Family AT4G00180 62.381 1.98e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gso3g0238 YABBY 2.6e-73 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0238 K25796 - gmx:100794423 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1160 1 46800854 46804144 Gso3g0238 3 3296412 3299510 GST