Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0235 ATGGCACCATTATTTTGTTTGCTAATAACCCTTCTACTTGCTCCCTTTCTATTCTCCTCCATTGCTTCCTCTTACTCATTCAAAGATATTCAATCATGGTGTAGCCAAACCCCTTACCCTCAACCATGTGAGTACTATTTGACCAACCAGGCCTTCAACCAACCCATCAAAAGCAAATCCGATTTCCTCAAAGTTTCCCTTCAGCTAGCCCTAGAGAGAGCACAAAGGAGTGAATTTAACACCCATGCCCTTGGCCCTAAGTGCCGCAATGTTCATGAAAAATCTGCATGGGCAGATTGCCTTGAACTCTATGAGTACACCATCCAAAAACTCAACAAAACCATTGCCCCTTACACCAAGTGCACCCAAACCGACACACAAACATGGCTCAGCACAGCCCTCACAAACCTTGAAACATGCAAAAACGGATTCTATGAGCTAGGTGTCCCTGACTATGTCCTACCCTTGATGTCCAATAATGTCACAAAGTTACTAAGCAACACCCTCTCTCTCAACAAAGGTCCTTACCAATACAAACCACCAAGTTACAAAGAAGGGTTTCCAACATGGGTGAAGCCTGGTGATAGAAAATTGTTGCAATCTTCTTCAGCTGCTTCTAAGGCTAATGTAGTGGTTGCAAAAGATGGTTCTGGAAAATACACAACAGTGAAAGCTGCTGTTGATGCTGCTCCAAGTAGTAGTGGAAGGTATGTGATATATGTGAAGGGTGGGGTGTACAATGAGCAAGTTGAGGTGAAAGCAAATAATATAATGTTGGTTGGAGATGGTATTGGAAAGACCATAATCACAGGTAGCAAAAGCGTTGGAGGAGGCACCACAACCTTCCGTTCAGCCACTGTTGCTGCTGTGGGTGATGGATTCATTGCTCAAGACATCACATTCAGGAACACAGCAGGAGCAGCAAATCACCAAGCAGTGGCATTCCGTTCTGGCTCAGATCTCTCAGTATTTTACAGATGCAGCTTTGAGGGTTTCCAAGACACACTATATGTTCATTCAGAGAGGCAATTCTACAGAGAATGTGACATTTATGGCACAGTGGATTTCATCTTTGGCAATGCTGCTGCAGTCTTGCAAAACTGCAACATCTATGCAAGAACCCCTCCACAGAGAACCATCACAGTCACAGCTCAAGGCAGAACTGACCCTAACCAAAACACAGGAATCATCATCCACAACTCCAAGGTCACAGGTGCCTCAGGCTTCAACCCTAGTTCTGTTAAGTCATACCTAGGAAGACCCTGGCAAAAGTACTCAAGAACAGTGTTCATGAAAACCTATCTTGATAGCTTGATCAACCCTGCTGGTTGGATGGAATGGGATGGTAACTTTGCCCTAGACACTTTGTACTATGCTGAATATGCAAACACTGGTCCAGGTTCCAACACTGCCAATAGGGTTACTTGGAAGGGCTACCATGTTCTCACTAGTGCTTCTGAGGCCTCACCTTTCACTGTTGGCAACTTCATTGCTGGTAGCAATTGGATACCTAGCTCTGGTGTCCCTTTCACCTCAGGACTTTGA 1545 0.4479 MAPLFCLLITLLLAPFLFSSIASSYSFKDIQSWCSQTPYPQPCEYYLTNQAFNQPIKSKSDFLKVSLQLALERAQRSEFNTHALGPKCRNVHEKSAWADCLELYEYTIQKLNKTIAPYTKCTQTDTQTWLSTALTNLETCKNGFYELGVPDYVLPLMSNNVTKLLSNTLSLNKGPYQYKPPSYKEGFPTWVKPGDRKLLQSSSAASKANVVVAKDGSGKYTTVKAAVDAAPSSSGRYVIYVKGGVYNEQVEVKANNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAAVGDGFIAQDITFRNTAGAANHQAVAFRSGSDLSVFYRCSFEGFQDTLYVHSERQFYRECDIYGTVDFIFGNAAAVLQNCNIYARTPPQRTITVTAQGRTDPNQNTGIIIHNSKVTGASGFNPSSVKSYLGRPWQKYSRTVFMKTYLDSLINPAGWMEWDGNFALDTLYYAEYANTGPGSNTANRVTWKGYHVLTSASEASPFTVGNFIAGSNWIPSSGVPFTSGL* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0235 514 Gene3D - 203 514 IPR012334 -
Gso3g0235 514 CDD PMEI-like_3 32 173 - -
Gso3g0235 514 SUPERFAMILY Pectin lyase-like 203 513 IPR011050 -
Gso3g0235 514 SMART PMEI_2 25 171 IPR006501 GO:0004857
Gso3g0235 514 Pfam Pectinesterase 209 499 IPR000070 GO:0030599|GO:0042545
Gso3g0235 514 Pfam Plant invertase/pectin methylesterase inhibitor 29 171 IPR006501 GO:0004857
Gso3g0235 514 PANTHER PECTINESTERASE 5 513 - -
Gso3g0235 514 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Gso3g0235 514 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
Gso3g0235 514 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 173 IPR006501 GO:0004857
Gso3g0235 514 PANTHER PECTINESTERASE 5 513 - -
Gso3g0235 514 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 174 IPR035513 -
Gso3g0235 514 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 173 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0235 Gso-Chr3 3224615 3228954 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0235 1 514 Carbohydrate Esterase AT2G45220 67.636 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0235 K01051 - gmx:100794948 1018.07