Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0233 ATGAAAGCTTTTCGCTTGTTCCTAACACTATTAATTCCTTTCTTACTCTCCTCTTTTGTTTCTGGTTATTCATGGAATGATGTTAAGCTTTGGTGCAACCAAACTCCAAACCCTCAACCATGTGAGTATTTCTTGAGCAATAACCCCACTTATCAATACAAACCCCTCAAGCAAAAATCCGATTTCCTCAAACTTTCATTACAACTTGCTCAAGAGAGAGCACTCAAAGGCCATGCAAACACTCTCTCACTTGGTTCAAAGTGCCGAAACCCACGTGAAAGAGGTGCCTGGGCTGATTGTGTTGAGCTTTATGAGCAAACTATCCGTAAACTCAACGAAACCCTAAACCCTGACCCTAACACAAAGTACTCCCAAGTTGATGCCCAAACATGGCTCAGCACAGCTCTCACTAACCTTGAGACATGCAAAGCCGGGTTCTATGAGCTTGGTGTTCAAGACTATGTTCTACCTTTGATGTCTAACAATGTTACCAAGTTGTTGAGCAACACCTTGTCACTTAACAAGGTTGAATATGAAGAACCAAGTTACAAAGAAGGGTTTCCAAAATGGGTGAAGCCAGGTGACAGAAAGTTGTTGCAATCATCTTCACCAGCTTCTAGGGCTAATGTGGTGGTTGCAAAAGATGGTTCTGGAAAATACACAACAGTGAGTGCAGCTGTAAATTCTGCTCCAAAGAATAGTAGAGGAAGGTATGTGATATATGTAAAGGGAGGGATATACAATGAACAAGTTGAGGTGAAATCAAAGAATATAATGTTGGTTGGAGATGGTATTGGAAAGACTATAATCACAGGTAGCAAAAGTGTTGGAGGGGGCACCACAACCTTTCGTTCAGCCACTGTAGCTGTAGTTGGGGACGGATTTATAGCTCAAGGTATCACATTTAGGAACACCGCTGGTGCAAAAAACCACCAAGCTGTAGCATTGCGTTCTGGATCAGACTTATCAGTGTTTTACAAATGTAGCTTTGAAGGTTATCAAGACACGCTATATGTCCACTCTGAGAGGCAATTCTATAGAGAGTGTAACATTTATGGCACTGTTGACTTCATATTTGGCAATGCTGCTGTTGTGTTACAAAACTGCAACATATTTGCAAGAAACCCTCCCAACAAAGTCAACACCATCACTGCACAAGGCAGAACCGATCCAAACCAAAACACTGGAATTTCCATTCACAATTCTAGAGTCACAGCTGCATCAGATTTGAGACCGGTTCAAAACTCGGTTAGGACTTATCTTGGAAGACCATGGAAGCAATATTCAAGAACGGTTTTCATGAAGACTTATCTTGATGGCTTGATCAATCCATCGGGTTGGATGGAATGGAGTGGTAACTTTGCATTGAACACACTTTATTATGGAGAGTACATGAACACTGGCCCAGGTTCCTCCACTGGTAGAAGAGTTAAATGGCCAGGTTATCGTGTTATAACTAGGGCTTCTGAAGCCTCAAAGTTCAGTGTTGCAAATTTTATTGCTGGAAATGCATGGTTACCTGCCACCAAAGTGCCTTATACACCTTCTCTGTAA 1554 0.4183 MKAFRLFLTLLIPFLLSSFVSGYSWNDVKLWCNQTPNPQPCEYFLSNNPTYQYKPLKQKSDFLKLSLQLAQERALKGHANTLSLGSKCRNPRERGAWADCVELYEQTIRKLNETLNPDPNTKYSQVDAQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTKLLSNTLSLNKVEYEEPSYKEGFPKWVKPGDRKLLQSSSPASRANVVVAKDGSGKYTTVSAAVNSAPKNSRGRYVIYVKGGIYNEQVEVKSKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQGITFRNTAGAKNHQAVALRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECNIYGTVDFIFGNAAVVLQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNSRVTAASDLRPVQNSVRTYLGRPWKQYSRTVFMKTYLDGLINPSGWMEWSGNFALNTLYYGEYMNTGPGSSTGRRVKWPGYRVITRASEASKFSVANFIAGNAWLPATKVPYTPSL* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0233 517 SUPERFAMILY Pectin lyase-like 203 514 IPR011050 -
Gso3g0233 517 Pfam Plant invertase/pectin methylesterase inhibitor 28 173 IPR006501 GO:0004857
Gso3g0233 517 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 176 IPR035513 -
Gso3g0233 517 SMART complete 242 420 IPR006633 -
Gso3g0233 517 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 175 IPR006501 GO:0004857
Gso3g0233 517 CDD PMEI-like_3 30 175 - -
Gso3g0233 517 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
Gso3g0233 517 Pfam Pectinesterase 209 503 IPR000070 GO:0030599|GO:0042545
Gso3g0233 517 Gene3D - 204 517 IPR012334 -
Gso3g0233 517 PANTHER PECTINESTERASE 7 514 - -
Gso3g0233 517 SMART PMEI_2 23 173 IPR006501 GO:0004857
Gso3g0233 517 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Gso3g0233 517 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 176 IPR035513 -
Gso3g0233 517 PANTHER PECTINESTERASE 7 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0233 Gso-Chr3 3181122 3184678 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0233 1 517 Carbohydrate Esterase AT2G45220 66.731 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0233 K01051 - gmx:100793904 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1166 1 46959943 46964227 Gso3g0233 3 3181122 3184678 GST