Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0232 ATGATAGCCTTTCGCTTATTCCTAGCACTATCACTTCCTTTCTTTCTCTCTTCTTTCGTTTCTAGTTATTCTTGGAATGACGTTAAACTTTGGTGTAGCCAAACCCCAAACCCTGAACCATGTGAGTATTTCCTGAGCAATAACCCCACTCACCAATACAAACCCATCAAGCAAAAATCCGAGTTTTTCAAACTTTCATTGCAACTTGCTCAAGAACGTGCCCTAAATGGCCATGCAAACACTCTTTCACTTGGTTCAAAATGCCGTAACCCACGTGAAACCGCTGCTTGGGCTGATTGTGTTGAGCTTTATGAACAAACCATTCGTAAACTCAACAAAACCCTAGACCCTAGCACCAAGTTCTCCCAAGTTGATACCCAAACATGGCTCAGCACAGCTCTCACTAACCTTGAGACATGCAAAGCCGGGTTCTATGAGCTTGGTGTTCAAGACTATGTTCTACCTCTGATGTCTAACAATGTTACCAAGTTGTTGAGCAACACCTTGGCACTTAACAAGGTTGAATATGAAGAACCAAGTTACAAAGATGGGTTCCCAACATGGGTGAAGCCAGGTGATAGAAAGCTGTTGCAAGCTTCTTCTCCAGCTTCTAAGGCTAATGTAGTTGTGGCAAAAGATGGCTCTGGAAAGTACACAACAGTGAGTGAAGCTGTAAATGCTGCACCCAAGAGTAACAGTGGAAGGTATGTGATATATGTGAAGGGAGGGATATACGATGAACAAGTTGAGATCAAAGCAAATAACATAATGTTGGTGGGAGATGGTATTGGGAAGACCATAATCACAAGTAGCAAAAGCGTTGGAGGGGGCACCACAACCTTCCGTTCAGCCACTGTTGCTGTTGTTGGAGATGGGTTTATAACACAAGACATCACATTTAGAAACACTGCCGGTGCAACAAACCACCAAGCTGTTGCATTGCGTTCTGGATCAGACCTATCAGTATTTTACAGATGCAGCTTTGAAGGTTACCAAGACACACTATATGTGTACTCCGATAGACAATTCTATAGAGAGTGTGACATATACGGCACAGTTGACTTCATCTTTGGTAATGCTGCTGTTGTGTTCCAAAACTGTAACATTTATGCAAGAAACCCTCCAAACAAAGTTAACACAATCACTGCTCAAGGAAGAACCGATCCAAACCAGAACACTGGCATTTCCATTCACAATTCAAAGGTTACTGCTGCCTCGGACTTGATGGGGGTTAGGACTTACCTTGGAAGGCCTTGGCAACAGTATTCAAGAACAGTTTTCATGAAGACTTATCTTGATAGTTTGATCAATCCAGAGGGTTGGTTGGAGTGGAGTGGTAACTTTGCATTAAGTACTTTGTACTATGGAGAATACATGAACACAGGACCAGGTTCCTCAACAGCAAACCGTGTTAATTGGTTGGGTTATCATGTCATTACAAGTGCTTCCGAAGCCTCAAAATTCACTGTTGGGAATTTTATTGCTGGAAACTCATGGTTGCCTGCCACCAGTGTGCCTTTCACCTCTGGTCTTTGA 1536 0.429 MIAFRLFLALSLPFFLSSFVSSYSWNDVKLWCSQTPNPEPCEYFLSNNPTHQYKPIKQKSEFFKLSLQLAQERALNGHANTLSLGSKCRNPRETAAWADCVELYEQTIRKLNKTLDPSTKFSQVDTQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVEYEEPSYKDGFPTWVKPGDRKLLQASSPASKANVVVAKDGSGKYTTVSEAVNAAPKSNSGRYVIYVKGGIYDEQVEIKANNIMLVGDGIGKTIITSSKSVGGGTTTFRSATVAVVGDGFITQDITFRNTAGATNHQAVALRSGSDLSVFYRCSFEGYQDTLYVYSDRQFYRECDIYGTVDFIFGNAAVVFQNCNIYARNPPNKVNTITAQGRTDPNQNTGISIHNSKVTAASDLMGVRTYLGRPWQQYSRTVFMKTYLDSLINPEGWLEWSGNFALSTLYYGEYMNTGPGSSTANRVNWLGYHVITSASEASKFTVGNFIAGNSWLPATSVPFTSGL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0232 511 Gene3D - 202 511 IPR012334 -
Gso3g0232 511 PANTHER PECTINESTERASE 9 510 - -
Gso3g0232 511 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 173 IPR006501 GO:0004857
Gso3g0232 511 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Gso3g0232 511 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Gso3g0232 511 PANTHER PECTINESTERASE 9 510 - -
Gso3g0232 511 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 174 IPR035513 -
Gso3g0232 511 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 174 IPR035513 -
Gso3g0232 511 CDD PMEI-like_3 30 173 - -
Gso3g0232 511 SMART PMEI_2 23 171 IPR006501 GO:0004857
Gso3g0232 511 Pfam Pectinesterase 207 497 IPR000070 GO:0030599|GO:0042545
Gso3g0232 511 SUPERFAMILY Pectin lyase-like 201 510 IPR011050 -
Gso3g0232 511 Pfam Plant invertase/pectin methylesterase inhibitor 28 171 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0232 Gso-Chr3 3162541 3164669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0232 1 511 Carbohydrate Esterase AT2G45220 67.761 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0232 K01051 - gmx:100819641 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1168 1 47042895 47045254 Gso3g0232 3 3162541 3164669 GST