Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0231 ATGGTCACTTATGTCGTCACCACCACCTTGTTCCTCTTCCTTGCCATGGCCATCACCACCCTTTGCCTCCAAGAAATTGAGGTGCTCCAAATGGCCCAAAACCATGTTTCTCAAGCCAAGAATTTGATTGGAAACTCTTTGAGATTGCATGGCTTGGGAAGCCTAAGTCTTTCTGATCAAACAAGTGCTACAATAGCCCTTAGTGATTGTGCCAAACTCTATGAGGAGAGTGAGTCTCGGCTCTCTCACATGATGTCTCAAGAGAGTTACTACGCCAAAGAAGATGCACTCACATGGATGAGTGCTGTGATGACAAATCATAGGACTTGTTTGGATGGATTGAAAGAAAAAGGGTATATTGAAGCTCAGGTTTTGGATAGGAACTTGACCATGTTGCTTAAGCAAGCTCTTGTTGTGTATTCAAAGAATAATAAAGGCAAAGGGAAAGGACCACCTGAGGGAACAATATCCAAATCAGATTATGCTGGTATTTTAGAATCATGGAGTGAATCAAGCTATAAGCCAGATTTCACAGTGGCACAGGATGGTTCAGGGACACACGGAACAATCCAAGCAGCAGTAAATGCACTTGCTGCAATGGGGCACAACCGTCCTGCAAGAGCAGTAATACATGTAAAATCAGGGGTCTATCATGAGAAGGTGGAAATTGGACAGAAACTGCATAATGTGATGCTTGTAGGAGATGGCATAGACAAAACTATTGTCACTGGCAACAGAAATGTTGTTCAAGGTTCTACCACTCTGAACTCAGCCACATTTGATGTATCAGGGGATGGATTCTGGGCCAGAGACATGACATTTGAGAACAGTGCTGGCCCAGAGAAGCACCAAGCAGTGGCACTCAAGGTAAGTTCAGACTTATCAGTGTTCTACAGGTGCAGCTTCAGAGCCTACCAAGACACTCTCTACGTGCACTCAAATCGTCAATTCTACCGCGACTGCTATGTATACGGCACCATTGATTTCATCTTTGGGGATGCAACAGTGGTGCTGCAGAACTGTGACATCTTTGTGAGGAAGCCAATGAGCCACCAATCCAACTTCATCACAGCACAAGGAAGAGATGACCCCAACAAGAACACAGGAATTTCAATCCAAAGCTGCAGGGTTAGGCCAGATTCTGAGTTTCTCACACTCAAGGAATCTTTCAAGACATTTCTTGGTAGGCCTTGGAGGAAGTACTCAAGGACTGTGTTTCTGAAAACTGATTTGGATGGTTTGGTTCACCCTAGAGGGTGGGGTGAATGGAGTGGAGAATTTGCACTCTCAACTTTGTACTATGGAGAGTACTTGAACACAGGTTATGGTGCCTCTACACAGAATAGGGTGAACTGGCCTGGTTTTCATGTGCTGAGGAGTGCTAGTGAGGCCACACCCTTCACTGTGAACCAGTTTCTGCAAGGGGAAAGGTGGATTCCTGCTACAGGGGTGCCATTCTCTTCTGGAATTTAA 1473 0.4521 MVTYVVTTTLFLFLAMAITTLCLQEIEVLQMAQNHVSQAKNLIGNSLRLHGLGSLSLSDQTSATIALSDCAKLYEESESRLSHMMSQESYYAKEDALTWMSAVMTNHRTCLDGLKEKGYIEAQVLDRNLTMLLKQALVVYSKNNKGKGKGPPEGTISKSDYAGILESWSESSYKPDFTVAQDGSGTHGTIQAAVNALAAMGHNRPARAVIHVKSGVYHEKVEIGQKLHNVMLVGDGIDKTIVTGNRNVVQGSTTLNSATFDVSGDGFWARDMTFENSAGPEKHQAVALKVSSDLSVFYRCSFRAYQDTLYVHSNRQFYRDCYVYGTIDFIFGDATVVLQNCDIFVRKPMSHQSNFITAQGRDDPNKNTGISIQSCRVRPDSEFLTLKESFKTFLGRPWRKYSRTVFLKTDLDGLVHPRGWGEWSGEFALSTLYYGEYLNTGYGASTQNRVNWPGFHVLRSASEATPFTVNQFLQGERWIPATGVPFSSGI* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0231 490 SUPERFAMILY Pectin lyase-like 173 489 IPR011050 -
Gso3g0231 490 CDD PMEI-like_4 26 144 - -
Gso3g0231 490 Pfam Pectinesterase 176 476 IPR000070 GO:0030599|GO:0042545
Gso3g0231 490 Pfam Plant invertase/pectin methylesterase inhibitor 29 136 IPR006501 GO:0004857
Gso3g0231 490 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 7 489 - -
Gso3g0231 490 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 131 IPR035513 -
Gso3g0231 490 SMART PMEI_2 13 139 IPR006501 GO:0004857
Gso3g0231 490 PANTHER PECTINESTERASE 7 489 - -
Gso3g0231 490 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 142 IPR035513 -
Gso3g0231 490 ProSitePatterns Pectinesterase signature 2. 323 332 IPR033131 -
Gso3g0231 490 TIGRFAM PME_inhib: pectinesterase inhibitor domain 61 138 IPR006501 GO:0004857
Gso3g0231 490 Gene3D - 170 490 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0231 Gso-Chr3 3146566 3150858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0231 2 490 Carbohydrate Esterase AT3G60730 53.448 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0231 K01051 - gmx:100792852 959.133