Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0228 ATGGCACAACTCAACCTCACATTGCTAGCCATTTTCCTCTCTCTCCTCTTTTTAATTCTTGCAACCCCAGTTGAGCCGTCAAAGCACAAAAATTCTCAAACAATGATCTACATAGAGTCCTCTTGCAATGACACCCTCTATCCAAATCTTTGCATTCGTTGCCTTGCCAGATATGCCAAATCCACCATAAATGGCCCTCAACACTTAGCCCAATATGCCTTGTCAGTTAGCCTCTCCAGAGCACTTCACACAAGAGGGTACCTTTTGAAAGTGGCCAAGGAAATTAAGTCTAATAAGGGTGCCAAGAACTACAAAAGGGAATACCTAACAGTGCAAGATTGTGTGAACCAAATCACTGATAGTGTGGAACAACTTAGCCAAGCTATAGAAGAACTTCGAAGGTTGAACAAAAGTGGATCAACCATCAATGATGACATGTTGTGGCACATAAGCAATGTTGAGACATGGGTGAGCACCGCCTTAACAGATGCTAGGAGTTGTGTGTACTCATTTCCTGGTCATAGGATGAGTAAGAGAGCAGCTTCTATTAAGGTTAAGGCTATGAATGTGGCAGAGGTTACTAGTAATGCACTTGCCTTGTTTCATAGATATGCATCTAGGTATCGGCAAGCAGAAGCTAGAACCACAAAGCCCTAG 657 0.4292 MAQLNLTLLAIFLSLLFLILATPVEPSKHKNSQTMIYIESSCNDTLYPNLCIRCLARYAKSTINGPQHLAQYALSVSLSRALHTRGYLLKVAKEIKSNKGAKNYKREYLTVQDCVNQITDSVEQLSQAIEELRRLNKSGSTINDDMLWHISNVETWVSTALTDARSCVYSFPGHRMSKRAASIKVKAMNVAEVTSNALALFHRYASRYRQAEARTTKP* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0228 218 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 204 IPR035513 -
Gso3g0228 218 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 204 IPR035513 -
Gso3g0228 218 SMART PMEI_2 33 200 IPR006501 GO:0004857
Gso3g0228 218 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 204 IPR006501 GO:0004857
Gso3g0228 218 Coils Coil 115 138 - -
Gso3g0228 218 Pfam Plant invertase/pectin methylesterase inhibitor 38 200 IPR006501 GO:0004857
Gso3g0228 218 PANTHER PECTINESTERASE INHIBITOR-LIKE 2 208 - -
Gso3g0228 218 CDD PMEI-like_3 40 206 - -
Gso3g0228 218 PANTHER BNAANNG18590D PROTEIN 2 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0228 Gso-Chr3 3117397 3118285 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0228 26 200 Carbohydrate Esterase AT3G14310 25.000 2.95e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0228 - - gmx:100807870 409.453